Phylogenetic and demographic characterization of directed HIV-1 transmission using deep sequences from high-risk and general population cohorts/groups in Uganda by Bbosa, N, Ssemwanga, D, Ssekagiri, A, Xi, X, Mayanja, Y, Bahemuka, U, Seeley, J, Pillay, D, Abeler-Dörner, L, Golubchik, T, Fraser, C, Kaleebu, P, Ratmann, O, PANGEA Consortium

HIV transmission dynamics and population-wide drug resistance in rural South Africa by Steven A. Kemp, Kimia Kamelian, Diego F. Cuadros, PANGEA Consortium, Vukuzazi Team, Mark T. K. Cheng, Elphas Okango, Willem Hanekom, Thumbi Ndung’u, Deenan Pillay, David Bonsall, Emily B. Wong, Frank Tanser, Mark J. Siedner, Ravindra K. Gupta

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Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial – BCPP/Ya Tsie trial by Lerato E Magosi, Yinfeng Zhang, Tanya Golubchik, Victor DeGruttola, Eric Tchetgen Tchetgen, Vladimir Novitsky, Janet Moore, Pam Bachanas, Tebogo Segolodi, Refeletswe Lebelonyane, Molly Pretorius Holme, Sikhulile Moyo, Joseph Makhema, Shahin Lockman, Christophe Fraser, Myron Max Essex, Marc Lipsitch, On behalf of The Botswana Combination Prevention Project and PANGEA consortium

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Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis by Ratmann, O, Grabowski, M, Hall, M, Golubchik, T, Wymant, C, Abeler-Dörner, L, Bonsall, D, Hoppe, A, Brown, A, De Oliveira, T, Gall, A, Kellam, P, Pillay, D, Kagaayi, J, Kigozi, G, Quinn, T, Wawer, M, Laeyendecker, O, Serwadda, D, Gray, R, Fraser, C, Pangea Consortium And Rakai Health Sciences Program

Prediction of Coreceptor Tropism in HIV-1 Subtype C in Botswana by Kenanao Kotokwe, Sikhulile Moyo, Melissa Zahralban-Steele, Molly Pretorius Holme, Pinkie Melamu, Catherine Kegakilwe Koofhethile, Wonderful Tatenda Choga, Terence Mohammed, Tapiwa Nkhisang, Baitshepi Mokaleng, Dorcas Maruapula, Tsotlhe Ditlhako, Ontlametse Bareng, Patrick Mokgethi, Corretah Boleo, Joseph Makhema, Shahin Lockman, Max Essex, Manon Ragonnet-Cronin, Vlad Novitsky, Simani Gaseitsiwe, PANGEA Consortium

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