The Genetic and Mechanistic Basis for Variation in Gene Regulation by Pai, Athma A., Pritchard, Jonathan K., Gilad, Yoav

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RNA-seq: impact of RNA degradation on transcript quantification by Gallego Romero, Irene, Tung, Jenny, Gilad, Yoav, Pai, Athma A.

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Numerous recursive sites contribute to accuracy of splicing in long introns in flies by Adelman, Karen, Pai, Athma A., Paggi, Joseph M., Yang, Paul L, Burge, Christopher B

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The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture by Henriques, Telmo, McCue, Kayla, Burkholder, Adam, Adelman, Karen, Pai, Athma A., Burge, Christopher B

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Widespread occurrence of hybrid internal-terminal exons in human transcriptomes by Fiszbein, Ana, McGurk, Michael, Calvo-Roitberg, Ezequiel, Kim, GyeungYun, Burge, Christopher B, Pai, Athma A

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Widespread Shortening of 3’ Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection by Baharian, Golshid, Pagé Sabourin, Ariane, Brinkworth, Jessica F., Nédélec, Yohann, Foley, Joseph W., Grenier, Jean-Christophe, Siddle, Katherine J., Dumaine, Anne, Yotova, Vania, Johnson, Zachary P., Lanford, Robert E., Barreiro, Luis B., Pai, Athma A., Burge, Christopher B

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Bacterial infection remodels the DNA methylation landscape of human dendritic cells by Pacis, Alain, Tailleux, Ludovic, Morin, Alexander M., Lambourne, John, MacIsaac, Julia L., Yotova, Vania, Dumaine, Anne, Danckaert, Anne, Luca, Francesca, Grenier, Jean-Christophe, Hansen, Kasper D., Gicquel, Brigitte, He, Chuan, Tung, Jenny, Pastinen, Tomi, Kobor, Michael S., Pique-Regi, Roger, Gilad, Yoav, Barreiro, Luis B., Pai, Athma A., Yu, Miao, Ph. D. Massachusetts Institute of Technology

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