RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star. av Sabah Kadri, Veronica F Hinman, Panayiotis V Benos

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DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies. av Shaun Mahony, Philip E Auron, Panayiotis V Benos

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An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs av Giorgio Bertolazzi, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello

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Editorial: Advances in Mathematical and Computational Oncology av George Bebis, Doron Levy, Russell Rockne, Ernesto Augusto Bueno Da Fonseca Lima, Panayiotis V. Benos

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Pre-vaccination transcriptomic profiles of immune responders to the MUC1 peptide vaccine for colon cancer prevention av Cheryl M. Cameron, Vineet Raghu, Vineet Raghu, Brian Richardson, Brian Richardson, Leah L. Zagore, Banumathi Tamilselvan, Jackelyn Golden, Michael Cartwright, Robert E. Schoen, Olivera J. Finn, Panayiotis V. Benos, Panayiotis V. Benos, Mark J. Cameron

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miR-1207-5p Can Contribute to Dysregulation of Inflammatory Response in COVID-19 via Targeting SARS-CoV-2 RNA av Giorgio Bertolazzi, Giorgio Bertolazzi, Chiara Cipollina, Chiara Cipollina, Panayiotis V. Benos, Michele Tumminello, Michele Tumminello, Claudia Coronnello

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SOP3: a web-based tool for selection of oligonucleotide primers for single nucleotide polymorphism analysis by Pyrosequencing® av Angela M. Alexander, Christopher Pecoraro, Alexis Styche, William A. Rudert, Panayiotis V. Benos, Steven Ringquist, Massimo Trucco

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Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets av Xin Bing, Tyler Lovelace, Florentina Bunea, Marten Wegkamp, Sudhir Pai Kasturi, Harinder Singh, Panayiotis V. Benos, Jishnu Das

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Development and validation of a mortality risk prediction model for chronic obstructive pulmonary disease: a cross-sectional study using probabilistic graphical modellingResearch i... av Tyler C. Lovelace, Min Hyung Ryu, Minxue Jia, Peter Castaldi, Frank C. Sciurba, Craig P. Hersh, Panayiotis V. Benos

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Identification of factors directly linked to incident chronic obstructive pulmonary disease: A causal graph modeling study. av Robert W Gregg, Chad M Karoleski, Edwin K Silverman, Frank C Sciurba, Dawn L DeMeo, Panayiotis V Benos

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Expression patterns of small numbers of transcripts from functionally-related pathways predict survival in multiple cancers av Jordan Mandel, Huabo Wang, Daniel P. Normolle, Wei Chen, Qi Yan, Peter C. Lucas, Panayiotis V. Benos, Edward V. Prochownik

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Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density. av Claudia Coronnello, Ryan Hartmaier, Arshi Arora, Luai Huleihel, Kusum V Pandit, Abha S Bais, Michael Butterworth, Naftali Kaminski, Gary D Stormo, Steffi Oesterreich, Panayiotis V Benos

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Expression of regulatory platelet microRNAs in patients with sickle cell disease. av Shilpa Jain, Maria G Kapetanaki, Nalini Raghavachari, Kimberly Woodhouse, Guoying Yu, Suchitra Barge, Claudia Coronnello, Panayiotis V Benos, Gregory J Kato, Naftali Kaminski, Mark T Gladwin

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Early events marking lung fibroblast transition to profibrotic state in idiopathic pulmonary fibrosis av Minxue Jia, Lorena Rosas, Maria G. Kapetanaki, Tracy Tabib, John Sebrat, Tamara Cruz, Anna Bondonese, Ana L. Mora, Robert Lafyatis, Mauricio Rojas, Panayiotis V. Benos

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Myofibroblast transcriptome indicates SFRP2hi fibroblast progenitors in systemic sclerosis skin av Tracy Tabib, Mengqi Huang, Nina Morse, Anna Papazoglou, Rithika Behera, Minxue Jia, Melissa Bulik, Daisy E. Monier, Panayiotis V. Benos, Wei Chen, Robyn Domsic, Robert Lafyatis

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High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells. av Yingze Zhang, Daniel Handley, Tommy Kaplan, Haiying Yu, Abha S Bais, Thomas Richards, Kusum V Pandit, Qilu Zeng, Panayiotis V Benos, Nir Friedman, Oliver Eickelberg, Naftali Kaminski

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Human ex vivo lung perfusion: a novel model to study human lung diseases av Nayra Cárdenes, John Sembrat, Kentaro Noda, Tyler Lovelace, Diana Álvarez, Humberto E. Trejo Bittar, Brian J. Philips, Mehdi Nouraie, Panayiotis V. Benos, Pablo G. Sánchez, Mauricio Rojas

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The plasma degradome reflects later development of NASH fibrosis after liver transplant av Jiang Li, Toshifumi Sato, María Hernández-Tejero, Juliane I. Beier, Khaled Sayed, Panayiotis V. Benos, Daniel W. Wilkey, Abhinav Humar, Michael L. Merchant, Andres Duarte-Rojo, Gavin E. Arteel

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Integrated unbiased multiomics defines disease-independent placental clusters in common obstetrical syndromes av Oren Barak, Tyler Lovelace, Samantha Piekos, Tianjiao Chu, Zhishen Cao, Elena Sadovsky, Jean-Francois Mouillet, Yingshi Ouyang, W. Tony Parks, Leroy Hood, Nathan D. Price, Panayiotis V. Benos, Yoel Sadovsky

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Ribosomopathy-like properties of murine and human cancers. av Sucheta Kulkarni, James M Dolezal, Huabo Wang, Laura Jackson, Jie Lu, Brian P Frodey, Atinuke Dosunmu-Ogunbi, Youjun Li, Marc Fromherz, Audry Kang, Lucas Santana-Santos, Panayiotis V Benos, Edward V Prochownik

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