Microbiome diversity protects against pathogens by nutrient blocking за авторством Spragge, F, Bakkeren, E, Jahn, MT, Araujo Batista Neves, E, Pearson, CF, Wang, X, Pankhurst, L, Cunrath, O, Foster, KR

Development of nanopore-based whole genome sequencing to allow Mycobacterium diagnosis directly from patient samples за авторством Pankhurst, L, Bradley, P, Votintseva, A, del Ojo Elias, C, Sanderson, N, Morgan, M, Walker, A, Peto, T, Crook, D, Iqbal, Z

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs за авторством Colquhoun, RM, Hall, MB, Lima, L, Roberts, LW, Malone, KM, Hunt, M, Letcher, B, Hawkey, J, George, S, Pankhurst, L, Iqbal, Z

Temporal and spatial changes in the microbial bioaerosol communities in green-waste composting. за авторством Pankhurst, L, Whitby, C, Pawlett, M, Larcombe, L, McKew, B, Deacon, L, Morgan, S, Villa, R, Drew, G, Tyrrel, S, Pollard, S, Coulon, F

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing. за авторством Mathers, A, Stoesser, N, Sheppard, A, Pankhurst, L, Giess, A, Yeh, A, Didelot, X, Turner, S, Sebra, R, Kasarskis, A, Peto, T, Crook, D, Sifri, C

Illumina short-read and MinION long-read whole genome sequencing to characterise the molecular epidemiology of an NDM-1-Serratia marcescens outbreak in Romania за авторством Phan, H, Stoesser, N, Maciuca, I, Toma, F, Szekely, E, Flonta, M, Hubbard, A, Pankhurst, L, Do, T, Peto, T, Walker, A, Crook, D, Timofte, D

Resolving plasmid structures in Enterobacteriaceae using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches за авторством George, S, Pankhurst, L, Hubbard, A, Votintseva, A, Stoesser, N, Sheppard, A, Mathers, A, Norris, R, Navickaite, I, Eaton, C, Iqbal, Z, Crook, D, Phan, H

Mycobacterial DNA extraction for whole-genome sequencing from early positive liquid (MGIT) cultures за авторством Votintseva, A, Pankhurst, L, Anson, L, Morgan, MR, Gascoyne-Binzi, D, Walker, T, Quan, T, Wyllie, D, Del Ojo Elias, C, Wilcox, M, Walker, A, Peto, T, Crook, D

DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing за авторством Anson, LW, Chau, K, Sanderson, N, Hoosdally, S, Bradley, P, Iqbal, Z, Phan, H, Foster, D, Oakley, S, Morgan, M, Peto, TEA, MMM Informatics Group, Crook, DW, Pankhurst, L

Can rapid integrated polymerase chain reaction-based diagnostics for gastrointestinal pathogens improve routine hospital infection control practice? A diagnostic study. за авторством Pankhurst, L, Macfarlane-Smith, L, Buchanan, J, Anson, L, Davies, K, O'Connor, L, Ashwin, H, Pike, G, Dingle, K, Peto, T, Wordsworth, S, Walker, A, Wilcox, M, Crook, D

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli за авторством Stoesser, N, Sheppard, AE, Peirano, G, Anson, LW, Pankhurst, L, Sebra, R, Phan, HTT, Kasarskis, A, Mathers, AJ, Peto, TEA, Bradford, P, Motyl, MR, Walker, AS, Crook, DW, Pitout, JD

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples за авторством Votintseva, A, Bradley, P, Pankhurst, L, del Ojo Elias, C, Loose, M, Nilgiriwala, K, Chatterjee, A, Smith, E, Sanderson, N, Walker, T, Morgan, M, Wyllie, D, Walker, A, Peto, T, Crook, D, Iqbal, Z

Same-day diagnostic and surveillance data for tuberculosis via whole genome sequencing of direct respiratory samples за авторством Iqbal, Z, Votintseva, A, Bradley, P, Pankhurst, L, del Ojo Elias, C, Loose, M, Nilgiriwala, K, Chatterjee, A, Smith, E, Sanderson, N, Walker, T, Morgan, M, Wyllie, D, Walker, A, Peto, T, Crook, D

Nested Russian doll-like genetic mobility drives rapid dissemination of the carbapenem resistance gene blaKPC за авторством Sheppard, A, Stoesser, N, Wilson, D, Sebra, R, Kasarkis, A, Anson, L, Giess, A, Pankhurst, L, Vaughan, A, Grim, C, Cox, H, Yeh, A, Sifri, C, Walker, A, Peto, T, Crook, D, Mathers, A

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study за авторством Pankhurst, L, Fermont, J, del Ojo Elias, C, Votintseva, A, Walker, T, Cole, K, Davies, J, Gascoyne-Binzi, D, Kohl, T, Kong, C, Lemaitre, N, Niemann, S, Paul, J, Rogers, T, Roycroft, E, Smith, E, Supply, P, Tang, P, Wilcox, M

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long and short-read whole-genome sequencing demonstrate multiple... за авторством Martin, J, Phan, H, Findlay, J, Stoesser, N, Pankhurst, L, Navickaite, I, De Maio, N, Eyre, D, Toogood, G, Orsi, N, Kirby, A, Young, N, Turton, J, Hill, R, Hopkins, K, Woodford, N, Peto, T, Walker, A, Crook, D, Wilcox, M

Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis за авторством Bradley, P, Gordon, N, Walker, T, Dunn, L, Heys, S, Huang, B, Earle, S, Pankhurst, L, Anson, L, De Cesare, M, Piazza, P, Votintseva, A, Golubchik, T, Wilson, D, Wyllie, D, Diel, R, Niemann, S, Feuerriegel, S, Kohl, T, Ismail, N, Omar, S, Smith, E, Buck, D, McVean, G, Walker, A, Peto, T, Crook, D, Iqbal, Z

Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis за авторством Bradley, P, Gordon, N, Walker, T, Dunn, L, Heys, S, Huang, B, Earle, S, Pankhurst, L, Anson, L, De Cesare, M, Piazza, P, Votintseva, A, Golubchik, T, Wilson, D, Wyllie, D, Diel, R, Niemann, S, Feuerriegel, S, Kohl, T, Ismail, N, Omar, S, Smith, E, Buck, D, McVean, G, Walker, A, Peto, T, Crook, D, Iqbal, Z

A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli demonstrates carbapenemase gene outbreaks involving sink sites requi... за авторством Decraene, V, Phan, H, George, R, Wyllie, D, Akinremi, O, Aiken, Z, Cleary, P, Dodgson, A, Pankhurst, L, Crook, D, Lenney, C, Walker, A, Woodford, N, Sebra, R, Fath-Ordoubadi, F, Mathers, A, Seale, A, Guiver, M, McEwan, A, Watts, V, Welfare, W, Stoesser, N, Cawthorne, J, TRACE Investigators’ Group

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131 за авторством Stoesser, N, Sheppard, AE, Pankhurst, L, De Maio, N, Moore, CE, Sebra, R, Turner, P, Anson, LW, Kasarskis, A, Batty, EM, Kos, V, Wilson, DJ, Phetsouvanh, R, Wyllie, D, Sokurenko, E, Manges, AR, Johnson, TJ, Price, LB, Peto, TEA, Johnson, JR, Didelot, X, Walker, AS, Crook, DW, Modernizing Medical Microbiology Informatics Group (MMMIG)