SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks by Paola Paci, Giulia Fiscon

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Alzheimer’s disease: insights from a network medicine perspective by Federica Conte, Paola Paci

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SAveRUNNER: an R-based tool for drug repurposing by Giulia Fiscon, Paola Paci

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Criticality of timing for anti-HIV therapy initiation. by Filippo Castiglione, Paola Paci

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Identifying correlations between chromosomal proximity of genes and distance of their products in protein-protein interaction networks of yeast. by Daniele Santoni, Filippo Castiglione, Paola Paci

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StaRTrEK:in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition by Federica Conte, Federico Papa, Paola Paci, Lorenzo Farina

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SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19. by Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci

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A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes by Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci

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A Comparison of Network-Based Methods for Drug Repurposing along with an Application to Human Complex Diseases by Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci

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Hepatitis B Virus and microRNAs: A Bioinformatics Approach by Verdiana Zulian, Giulia Fiscon, Paola Paci, Anna Rosa Garbuglia

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An integrative in-silico analysis discloses a novel molecular subset of colorectal cancer possibly eligible for immune checkpoint immunotherapy by Pasquale Sibilio, Francesca Belardinilli, Valerio Licursi, Paola Paci, Giuseppe Giannini

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Stochastic modeling of expression kinetics identifies messenger half-lives and reveals sequential waves of co-ordinated transcription and decay. by Filippo Cacace, Paola Paci, Valerio Cusimano, Alfredo Germani, Lorenzo Farina

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Identification of Potential Repurposable Drugs in Alzheimer’s Disease Exploiting a Bioinformatics Analysis by Giulia Fiscon, Pasquale Sibilio, Alessio Funari, Federica Conte, Paola Paci

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GIANT: a cytoscape plugin for modular networks. by Fabio Cumbo, Paola Paci, Daniele Santoni, Luisa Di Paola, Alessandro Giuliani

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Repurposing Histaminergic Drugs in Multiple Sclerosis by Susanna Amadio, Federica Conte, Giorgia Esposito, Giulia Fiscon, Paola Paci, Cinzia Volonté

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Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer. by Federica Conte, Giulia Fiscon, Matteo Chiara, Teresa Colombo, Lorenzo Farina, Paola Paci

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In silico recognition of a prognostic signature in basal-like breast cancer patients. by Federica Conte, Pasquale Sibilio, Anna Maria Grimaldi, Marco Salvatore, Paola Paci, Mariarosaria Incoronato

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Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery by Paola Paci, Giulia Fiscon, Federica Conte, Rui-Sheng Wang, Lorenzo Farina, Joseph Loscalzo

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Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects by Paola Paci, Giulia Fiscon, Federica Conte, Rui-Sheng Wang, Diane E. Handy, Lorenzo Farina, Joseph Loscalzo

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The role of FOSL1 in stem-like cell reprogramming processes by Valeria Pecce, Antonella Verrienti, Giulia Fiscon, Marialuisa Sponziello, Federica Conte, Luana Abballe, Cosimo Durante, Lorenzo Farina, Sebastiano Filetti, Paola Paci

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