Advances and Challenges in Metatranscriptomic Analysis by Migun Shakya, Chien-Chi Lo, Patrick S. G. Chain

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Epigenetic regulation of gene expression in Shiga toxin-producing Escherichia coli: Transcriptomic data by Michelle Qiu Carter, Bin Hu, Patrick S.G. Chain

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Genomic Analysis of Diverse Members of the Fungal Genus Monosporascus Reveals Novel Lineages, Unique Genome Content and a Potential Bacterial Associate by Aaron J. Robinson, Donald O. Natvig, Patrick S. G. Chain

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Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing <i>Escherichia coli</i> O145:H28 by Michelle Qiu Carter, Nicole Laniohan, Chien-Chi Lo, Patrick S. G. Chain

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Building International Genomics Collaboration for Global Health Security by Helen H Cui, Tracy eErkkila, Patrick S G Chain, Momchilo eVuyisich

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Erratum for Longley et al., “Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes” by Reid Longley, Aaron J. Robinson, Olivia A. Asher, Earl Middlebrook, Gregory Bonito, Patrick S. G. Chain

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Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes by Reid Longley, Aaron J. Robinson, Olivia A. Asher, Earl Middlebrook, Gregory Bonito, Patrick S. G. Chain

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The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice by Erick S. LeBrun, Meghali Nighot, Viszwapriya Dharmaprakash, Anand Kumar, Chien-Chi Lo, Patrick S. G. Chain, Thomas Y. Ma

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Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns by Ashley Thommana, Migun Shakya, Jaykumar Gandhi, Christian K. Fung, Patrick S. G. Chain, Irina Maljkovic Berry, Matthew A. Conte

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Fabricated devices for performing bacterial-fungal interaction experiments across scales by Julia M. Kelliher, Leah Y. D. Johnson, Aaron J. Robinson, Reid Longley, Buck T. Hanson, Guillaume Cailleau, Saskia Bindschedler, Pilar Junier, Patrick S. G. Chain

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A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis by Sofiya N. Micheva-Viteva, Migun Shakya, Samantha H. Adikari, Cheryl D. Gleasner, Nileena Velappan, Judith R. Mourant, Patrick S. G. Chain, Elizabeth Hong-Geller

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A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis by Sofiya N. Micheva-Viteva, Migun Shakya, Samantha H. Adikari, Cheryl D. Gleasner, Nileena Velappan, Judith R. Mourant, Patrick S. G. Chain, Elizabeth Hong-Geller

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Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian by Nicole E. Avalon, Alison E. Murray, Hajnalka E. Daligault, Chien-Chi Lo, Karen W. Davenport, Armand E. K. Dichosa, Patrick S. G. Chain, Bill J. Baker

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Advances and Challenges in Fluorescence in situ Hybridization for Visualizing Fungal Endobacteria by Demosthenes P. Morales, Aaron J. Robinson, Andrew C. Pawlowski, Andrew C. Pawlowski, Caitlyn Ark, Julia M. Kelliher, Pilar Junier, James H. Werner, Patrick S. G. Chain

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The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research by Julia M. Kelliher, Aaron J. Robinson, Reid Longley, Leah Y. D. Johnson, Buck T. Hanson, Demosthenes P. Morales, Guillaume Cailleau, Pilar Junier, Gregory Bonito, Patrick S. G. Chain

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Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants. by Birgit eMitter, Alexandra ePetric, Maria W Shin, Patrick S G Chain, Lena eHauberg-Lotte, Barbara eReinhold-Hurek, Jerzy eNowak, Angela eSessitsch

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Genomic and Phenotypic Characterization of Shiga Toxin-Producing <i>Escherichia albertii</i> Strains Isolated from Wild Birds in a Major Agricultural Region in California by Michelle Qiu Carter, Beatriz Quiñones, Xiaohua He, Antares Pham, Diana Carychao, Michael B. Cooley, Chien-Chi Lo, Patrick S. G. Chain, Rebecca L. Lindsey, James L. Bono

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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution by Gang Tao, Steven Ahrendt, Shingo Miyauchi, XiaoJie Zhu, Hao Peng, Kurt Labutti, Alicia Clum, Richard Hayes, Patrick S. G. Chain, Igor V. Grigoriev, Gregory Bonito, Francis M. Martin

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Streptococcus mutans Displays Altered Stress Responses While Enhancing Biofilm Formation by Lactobacillus casei in Mixed-Species Consortium by Zezhang T. Wen, Zezhang T. Wen, Zezhang T. Wen, Sumei Liao, Jacob P. Bitoun, Arpan De, Ashton Jorgensen, Shihai Feng, Xiaoming Xu, Patrick S. G. Chain, Page W. Caufield, Hyun Koo, Yihong Li

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The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. by Mark W J van Passel, Ravi Kant, Erwin G Zoetendal, Caroline M Plugge, Muriel Derrien, Stephanie A Malfatti, Patrick S G Chain, Tanja Woyke, Airi Palva, Willem M de Vos, Hauke Smidt

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