Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing <i>Escherichia coli</i> O145:H28 by Michelle Qiu Carter, Nicole Laniohan, Chien-Chi Lo, Patrick S. G. Chain

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Erratum for Longley et al., “Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes” by Reid Longley, Aaron J. Robinson, Olivia A. Asher, Earl Middlebrook, Gregory Bonito, Patrick S. G. Chain

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Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes by Reid Longley, Aaron J. Robinson, Olivia A. Asher, Earl Middlebrook, Gregory Bonito, Patrick S. G. Chain

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The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice by Erick S. LeBrun, Meghali Nighot, Viszwapriya Dharmaprakash, Anand Kumar, Chien-Chi Lo, Patrick S. G. Chain, Thomas Y. Ma

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Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns by Ashley Thommana, Migun Shakya, Jaykumar Gandhi, Christian K. Fung, Patrick S. G. Chain, Irina Maljkovic Berry, Matthew A. Conte

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Fabricated devices for performing bacterial-fungal interaction experiments across scales by Julia M. Kelliher, Leah Y. D. Johnson, Aaron J. Robinson, Reid Longley, Buck T. Hanson, Guillaume Cailleau, Saskia Bindschedler, Pilar Junier, Patrick S. G. Chain

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A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis by Sofiya N. Micheva-Viteva, Migun Shakya, Samantha H. Adikari, Cheryl D. Gleasner, Nileena Velappan, Judith R. Mourant, Patrick S. G. Chain, Elizabeth Hong-Geller

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Advances and Challenges in Fluorescence in situ Hybridization for Visualizing Fungal Endobacteria by Demosthenes P. Morales, Aaron J. Robinson, Andrew C. Pawlowski, Andrew C. Pawlowski, Caitlyn Ark, Julia M. Kelliher, Pilar Junier, James H. Werner, Patrick S. G. Chain

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The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research by Julia M. Kelliher, Aaron J. Robinson, Reid Longley, Leah Y. D. Johnson, Buck T. Hanson, Demosthenes P. Morales, Guillaume Cailleau, Pilar Junier, Gregory Bonito, Patrick S. G. Chain

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Genomic and Phenotypic Characterization of Shiga Toxin-Producing <i>Escherichia albertii</i> Strains Isolated from Wild Birds in a Major Agricultural Region in California by Michelle Qiu Carter, Beatriz Quiñones, Xiaohua He, Antares Pham, Diana Carychao, Michael B. Cooley, Chien-Chi Lo, Patrick S. G. Chain, Rebecca L. Lindsey, James L. Bono

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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution by Gang Tao, Steven Ahrendt, Shingo Miyauchi, XiaoJie Zhu, Hao Peng, Kurt Labutti, Alicia Clum, Richard Hayes, Patrick S. G. Chain, Igor V. Grigoriev, Gregory Bonito, Francis M. Martin

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Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles by Rebecca D. Prescott, Rebecca D. Prescott, Tatyana Zamkovaya, Stuart P. Donachie, Diana E. Northup, Joseph J. Medley, Natalia Monsalve, Jimmy H. Saw, Alan W. Decho, Patrick S. G. Chain, Penelope J. Boston

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Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods. by Andrew W Bartlow, Zachary R Stromberg, Cheryl D Gleasner, Bin Hu, Karen W Davenport, Shailja Jakhar, Po-E Li, Molly Vosburg, Madhavi Garimella, Patrick S G Chain, Tracy H Erkkila, Jeanne M Fair, Harshini Mukundan

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Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. by Guillaume Cailleau, Buck T. Hanson, Melissa Cravero, Sami Zhioua, Patrick Hilpish, Celia Ruiz, Aaron J. Robinson, Julia M. Kelliher, Demosthenes Morales, La Verne Gallegos-Graves, Gregory Bonito, Patrick S.G. Chain, Saskia Bindschedler, Pilar Junier

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Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods by Andrew W. Bartlow, Zachary R. Stromberg, Cheryl D. Gleasner, Bin Hu, Karen W. Davenport, Shailja Jakhar, Po-E Li, Molly Vosburg, Madhavi Garimella, Patrick S. G. Chain, Tracy H. Erkkila, Jeanne M. Fair, Harshini Mukundan

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Metabolic versatility of Caldarchaeales from geothermal features of Hawai’i and Chile as revealed by five metagenome-assembled genomes by Manolya Gul Balbay, Maximillian D. Shlafstein, Charles Cockell, Sherry L. Cady, Rebecca D. Prescott, Rebecca D. Prescott, Rebecca D. Prescott, Rebecca D. Prescott, Darlene S. S. Lim, Patrick S. G. Chain, Stuart P. Donachie, Alan W. Decho, Jimmy H. Saw

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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi by Reid Longley, Aaron Robinson, Julian A. Liber, Abigail E. Bryson, Demosthenes P. Morales, Kurt LaButti, Robert Riley, Stephen J. Mondo, Alan Kuo, Yuko Yoshinaga, Chris Daum, Kerrie Barry, Igor V. Grigoriev, Alessandro Desirò, Patrick S. G. Chain, Gregory Bonito

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Uncovering the Core Microbiome and Distribution of Palmerolide in <i>Synoicum adareanum</i> Across the Anvers Island Archipelago, Antarctica by Alison E. Murray, Nicole E. Avalon, Lucas Bishop, Karen W. Davenport, Erwan Delage, Armand E.K. Dichosa, Damien Eveillard, Mary L. Higham, Sofia Kokkaliari, Chien-Chi Lo, Christian S. Riesenfeld, Ryan M. Young, Patrick S.G. Chain, Bill J. Baker

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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows by Ryan Connor, Migun Shakya, David A. Yarmosh, Wolfgang Maier, Ross Martin, Rebecca Bradford, J. Rodney Brister, Patrick S. G. Chain, Courtney A. Copeland, Julia di Iulio, Bin Hu, Philip Ebert, Jonathan Gunti, Yumi Jin, Kenneth S. Katz, Andrey Kochergin, Tré LaRosa, Jiani Li, Po-E Li, Chien-Chi Lo, Sujatha Rashid, Evguenia S. Maiorova, Chunlin Xiao, Vadim Zalunin, Lisa Purcell, Kim D. Pruitt

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Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale by Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais K. Player Jackson, Julia Kelliher, Po-E. Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain

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