High-quality ChIP-seq analysis of MBD3 in human breast cancer cells por Takashi Shimbo, Motoki Takaku, Paul A. Wade

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Low-input ATAC&mRNA-seq protocol for simultaneous profiling of chromatin accessibility and gene expression por Ruifang Li, Sara A. Grimm, Paul A. Wade

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A simple and robust method for simultaneous dual-omics profiling with limited numbers of cells por Ruifang Li, Sara A. Grimm, Paul A. Wade

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The transcription factors Snail and Slug activate the transforming growth factor-beta signaling pathway in breast cancer. por Archana Dhasarathy, Dhiral Phadke, Deepak Mav, Ruchir R Shah, Paul A Wade

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Alterations in promoter interaction landscape and transcriptional network underlying metabolic adaptation to diet por Yufeng Qin, Sara A. Grimm, John D. Roberts, Kaliopi Chrysovergis, Paul A. Wade

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Interaction of the pioneer transcription factor GATA3 with nucleosomes por Hiroki Tanaka, Yoshimasa Takizawa, Motoki Takaku, Daiki Kato, Yusuke Kumagawa, Sara A. Grimm, Paul A. Wade, Hitoshi Kurumizaka

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Cryo-EM structure of the nucleosome containing the ALB1 enhancer DNA sequence por Yoshimasa Takizawa, Hiroki Tanaka, Shinichi Machida, Masako Koyama, Kazumitsu Maehara, Yasuyuki Ohkawa, Paul A. Wade, Matthias Wolf, Hitoshi Kurumizaka

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MBD3 localizes at promoters, gene bodies and enhancers of active genes. por Takashi Shimbo, Ying Du, Sara A Grimm, Archana Dhasarathy, Deepak Mav, Ruchir R Shah, Huidong Shi, Paul A Wade

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Transcriptome and DNA Methylome Analysis in a Mouse Model of Diet-Induced Obesity Predicts Increased Risk of Colorectal Cancer por Ruifang Li, Sara A. Grimm, Deepak Mav, Haiwei Gu, Danijel Djukovic, Ruchir Shah, B. Alex Merrick, Daniel Raftery, Paul A. Wade

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Multiple tissue-specific epigenetic alterations regulate persistent gene expression changes following developmental DES exposure in mouse reproductive tissues por Tanner B. Jefferson, Tianyuan Wang, Wendy N. Jefferson, Yin Li, Katherine J. Hamilton, Paul A. Wade, Carmen J. Williams, Kenneth S. Korach

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An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression por Yufeng Qin, John D. Roberts, Sara A. Grimm, Fred B. Lih, Leesa J. Deterding, Ruifang Li, Kaliopi Chrysovergis, Paul A. Wade

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NLRX1 Deficiency Alters the Gut Microbiome and Is Further Exacerbated by Adherence to a Gluten-Free Diet por Holly A. Morrison, Yang Liu, Kristin Eden, Kristin Eden, Margaret A. Nagai-Singer, Paul A. Wade, Irving C. Allen, Irving C. Allen

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Genome-wide binding of MBD2 reveals strong preference for highly methylated loci. por Roberta Menafra, Arie B Brinkman, Filomena Matarese, Gianluigi Franci, Stefanie J J Bartels, Luan Nguyen, Takashi Shimbo, Paul A Wade, Nina C Hubner, Hendrik G Stunnenberg

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GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network por Motoki Takaku, Sara A. Grimm, John D. Roberts, Kaliopi Chrysovergis, Brian D. Bennett, Page Myers, Lalith Perera, Charles J. Tucker, Charles M. Perou, Paul A. Wade

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Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells por Christopher G. Duncan, Hrisavgi D. Kondilis-Mangum, Sara A. Grimm, Pierre R. Bushel, Kaliopi Chrysovergis, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade

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Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota por Yun Fan, Hong Qian, Meijia Zhang, Chengzhe Tao, Zhi Li, Wenkai Yan, Yuna Huang, Yan Zhang, Qiaoqiao Xu, Xinru Wang, Paul A. Wade, Yankai Xia, Yufeng Qin, Chuncheng Lu

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Maternal Age at Delivery Is Associated with an Epigenetic Signature in Both Newborns and Adults. por Christina A Markunas, Allen J Wilcox, Zongli Xu, Bonnie R Joubert, Sophia Harlid, Vijayalakshmi Panduri, Siri E Håberg, Wenche Nystad, Stephanie J London, Dale P Sandler, Rolv T Lie, Paul A Wade, Jack A Taylor

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Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms por Linfeng Gao, Max Emperle, Yiran Guo, Sara A. Grimm, Wendan Ren, Sabrina Adam, Hidetaka Uryu, Zhi-Min Zhang, Dongliang Chen, Jiekai Yin, Michael Dukatz, Hiwot Anteneh, Renata Z. Jurkowska, Jiuwei Lu, Yinsheng Wang, Pavel Bashtrykov, Paul A. Wade, Gang Greg Wang, Albert Jeltsch, Jikui Song

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Covalent Modifications of Histone H3K9 Promote Binding of CHD3 por Adam H. Tencer, Khan L. Cox, Luo Di, Joseph B. Bridgers, Jie Lyu, Xiaodong Wang, Jennifer K. Sims, Tyler M. Weaver, Hillary F. Allen, Yi Zhang, Jovylyn Gatchalian, Michael A. Darcy, Matthew D. Gibson, Jinzen Ikebe, Wei Li, Paul A. Wade, Jeffrey J. Hayes, Brian D. Strahl, Hidetoshi Kono, Michael G. Poirier, Catherine A. Musselman, Tatiana G. Kutateladze

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DNA methylation in mice is influenced by genetics as well as sex and life experience por Sara A. Grimm, Takashi Shimbo, Motoki Takaku, James W. Thomas, Scott Auerbach, Brian D. Bennett, John R. Bucher, Adam B. Burkholder, Frank Day, Ying Du, Christopher G. Duncan, John E. French, Julie F. Foley, Jianying Li, B. Alex Merrick, Raymond R. Tice, Tianyuan Wang, Xiaojiang Xu, NISC Comparative Sequencing Program, Pierre R. Bushel, David C. Fargo, James C. Mullikin, Paul A. Wade

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