Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2 by Camille Martin-Gallausiaux, Antoine Malabirade, Janine Habier, Paul Wilmes, Paul Wilmes

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Metaproteomics provides functional insight into activated sludge wastewater treatment. by Paul Wilmes, Margaret Wexler, Philip L Bond

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Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies by Susana Martínez Arbas, Susheel Bhanu Busi, Pedro Queirós, Laura de Nies, Malte Herold, Patrick May, Paul Wilmes, Paul Wilmes, Emilie E. L. Muller, Shaman Narayanasamy

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Mobilome-driven segregation of the resistome in biological wastewater treatment by Laura de Nies, Susheel Bhanu Busi, Benoit Josef Kunath, Patrick May, Paul Wilmes

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A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems by Magdalena Calusinska, Xavier Goux, Marie Fossépré, Emilie E. L. Muller, Paul Wilmes, Philippe Delfosse

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Evolution of the murine gut resistome following broad-spectrum antibiotic treatment by Laura de Nies, Susheel Bhanu Busi, Mina Tsenkova, Rashi Halder, Elisabeth Letellier, Paul Wilmes

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Integration of multiple flexible electrodes for real-time detection of barrier formation with spatial resolution in a gut-on-chip system by Mara Lucchetti, Gabriel Werr, Sofia Johansson, Laurent Barbe, Léa Grandmougin, Paul Wilmes, Maria Tenje

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Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome by Oskar Hickl, Anna Heintz-Buschart, Anke Trautwein-Schult, Rajna Hercog, Peer Bork, Paul Wilmes, Dörte Becher

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The complex exogenous RNA spectra in human plasma: an interface with human gut biota? by Kai Wang, Hong Li, Yue Yuan, Alton Etheridge, Yong Zhou, David Huang, Paul Wilmes, David Galas

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Cross-domain interactions confer stability to benthic biofilms in proglacial streams by Susheel Bhanu Busi, Susheel Bhanu Busi, Hannes Peter, Jade Brandani, Tyler J. Kohler, Tyler J. Kohler, Stilianos Fodelianakis, Paraskevi Pramateftaki, Massimo Bourquin, Grégoire Michoud, Leïla Ezzat, Leïla Ezzat, Stuart Lane, Paul Wilmes, Paul Wilmes, Tom J. Battin

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From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders by Aicha Kriaa, Vincent Mariaule, Charlotte De Rudder, Amin Jablaoui, Harry Sokol, Paul Wilmes, Emmanuelle Maguin, Moez Rhimi

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Optimised biomolecular extraction for metagenomic analysis of microbial biofilms from high-mountain streams by Susheel Bhanu Busi, Paraskevi Pramateftaki, Jade Brandani, Stilianos Fodelianakis, Hannes Peter, Rashi Halder, Paul Wilmes, Tom J. Battin

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ICoVeR – an interactive visualization tool for verification and refinement of metagenomic bins by Bertjan Broeksema, Magdalena Calusinska, Fintan McGee, Klaas Winter, Francesco Bongiovanni, Xavier Goux, Paul Wilmes, Philippe Delfosse, Mohammad Ghoniem

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SARS-CoV-2 transmission in educational settings during an early summer epidemic wave in Luxembourg, 2020 by Joël Mossong, Laurent Mombaerts, Lisa Veiber, Jessica Pastore, Gwenaëlle Le Coroller, Michael Schnell, Silvana Masi, Laetitia Huiart, Paul Wilmes

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PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data by Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz-Buschart, Cedric Christian Laczny, Patrick May, Paul Wilmes

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A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. by Alexis P Yelton, Brian C Thomas, Sheri L Simmons, Paul Wilmes, Adam Zemla, Michael P Thelen, Nicholas Justice, Jillian F Banfield

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The microbiome of cryospheric ecosystems by Massimo Bourquin, Susheel Bhanu Busi, Stilianos Fodelianakis, Hannes Peter, Alex Washburne, Tyler J. Kohler, Leïla Ezzat, Grégoire Michoud, Paul Wilmes, Tom J. Battin

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Gut microbiome is not associated with mild cognitive impairment in Parkinson’s disease by Velma T. E. Aho, Matthias Klee, Zied Landoulsi, Anna Heintz-Buschart, Lukas Pavelka, Anja K. Leist, Rejko Krüger, Patrick May, Paul Wilmes, on behalf of the NCER-PD Consortium

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Genome Sequencing of SARS-CoV-2 Allows Monitoring of Variants of Concern through Wastewater by Malte Herold, Aymeric Fouquier d'Hérouël, Patrick May, Francesco Delogu, Anke Wienecke-Baldacchino, Jessica Tapp, Cécile Walczak, Paul Wilmes, Henry-Michel Cauchie, Guillaume Fournier, Leslie Ogorzaly

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A microfluidics-based in vitro model of the gastrointestinal human–microbe interface by Pranjul Shah, Joëlle V. Fritz, Enrico Glaab, Mahesh S. Desai, Kacy Greenhalgh, Audrey Frachet, Magdalena Niegowska, Matthew Estes, Christian Jäger, Carole Seguin-Devaux, Frederic Zenhausern, Paul Wilmes

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