Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers by Oza Zaheed, Stephen J. Kiniry, Pavel V. Baranov, Pavel V. Baranov, Kellie Dean

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A frameshift in time by Martina M Yordanova, Pavel V Baranov

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Codon size reduction as the origin of the triplet genetic code. by Pavel V Baranov, Maxime Venin, Gregory Provan

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Comparative survey of the relative impact of mRNA features on local ribosome profiling read density by Patrick B. F. O’Connor, Dmitry E. Andreev, Pavel V. Baranov

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Opposite Expression Patterns of Spry3 and p75NTR in Cerebellar Vermis Suggest a Male-Specific Mechanism of Autism Pathogenesis by Zhenfei Ning, John M. Williams, Romika Kumari, Pavel V. Baranov, Tom Moore

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Simplicity DiffExpress: A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and Analysis by Cintia C. Palu, Cintia C. Palu, Marcelo Ribeiro-Alves, Yanxin Wu, Yanxin Wu, Brendan Lawlor, Brendan Lawlor, Pavel V. Baranov, Pavel V. Baranov, Brian Kelly, Paul Walsh, Paul Walsh

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Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals by Alla D. Fedorova, Stephen J. Kiniry, Dmitry E. Andreev, Jonathan M. Mudge, Pavel V. Baranov

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Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals by Alla D. Fedorova, Stephen J. Kiniry, Dmitry E. Andreev, Jonathan M. Mudge, Pavel V. Baranov

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Non-AUG translation initiation in mammals by Dmitry E. Andreev, Gary Loughran, Alla D. Fedorova, Maria S. Mikhaylova, Ivan N. Shatsky, Pavel V. Baranov

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TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response by Dmitry E Andreev, Maxim Arnold, Stephen J Kiniry, Gary Loughran, Audrey M Michel, Dmitrii Rachinskii, Pavel V Baranov

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Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection by Patrick B. F. O’Connor, Jennifer Mahony, Eoghan Casey, Pavel V. Baranov, Douwe van Sinderen, Martina M. Yordanova

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Systematic analysis of the PTEN 5′ leader identifies a major AUU initiated proteoform by Ioanna Tzani, Ivaylo P. Ivanov, Dmitri E. Andreev, Ruslan I. Dmitriev, Kellie A. Dean, Pavel V. Baranov, John F. Atkins, Gary Loughran

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Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression by Dmitry E Andreev, Patrick BF O'Connor, Ciara Fahey, Elaine M Kenny, Ilya M Terenin, Sergey E Dmitriev, Paul Cormican, Derek W Morris, Ivan N Shatsky, Pavel V Baranov

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Evolution of naturally arising SARS-CoV-2 defective interfering particles by Samer Girgis, Zaikun Xu, Spyros Oikonomopoulos, Alla D. Fedorova, Egor P. Tchesnokov, Calvin J. Gordon, T. Martin Schmeing, Matthias Götte, Nahum Sonenberg, Pavel V. Baranov, Jiannis Ragoussis, Tom C. Hobman, Jerry Pelletier

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Mitochondrial complex IV defects induce metabolic and signaling perturbations that expose potential vulnerabilities in HCT116 cells by Oro Uchenunu, Alexander V. Zhdanov, Phillipe Hutton, Predrag Jovanovic, Ye Wang, Dmitry E. Andreev, Laura Hulea, David J. Papadopoli, Daina Avizonis, Pavel V. Baranov, Michael N. Pollak, Dmitri B. Papkovsky, Ivan Topisirovic

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Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F by Jennifer Chu, Wenhan Zhang, Regina Cencic, Patrick B.F. O’Connor, Francis Robert, William G. Devine, Asher Selznick, Thomas Henkel, William C. Merrick, Lauren E. Brown, Pavel V. Baranov, John A. Porco, Jr., Jerry Pelletier

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Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling by Gesche K. Gerresheim, Jochen Bathke, Audrey M. Michel, Dmitri E. Andreev, Lyudmila A. Shalamova, Oliver Rossbach, Pan Hu, Dieter Glebe, Markus Fricke, Manja Marz, Alexander Goesmann, Stephen J. Kiniry, Pavel V. Baranov, Ivan N. Shatsky, Michael Niepmann

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Impact of eIF2α phosphorylation on the translational landscape of mouse embryonic stem cells by Mehdi Amiri, Stephen J. Kiniry, Anthony P. Possemato, Niaz Mahmood, Tayebeh Basiri, Catherine R. Dufour, Negar Tabatabaei, Qiyun Deng, Michael A. Bellucci, Keerthana Harwalkar, Matthew P. Stokes, Vincent Giguère, Randal J. Kaufman, Yojiro Yamanaka, Pavel V. Baranov, Soroush Tahmasebi, Nahum Sonenberg

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