Sieve analysis to understand how SARS-CoV-2 diversity can impact vaccine protection. ‌ Morgane Rolland, Peter B Gilbert

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On modeling HIV and T cells in vivo: assessing causal estimators in vaccine trials. ‌ W David Wick, Peter B Gilbert, Steven G Self

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chngpt: threshold regression model estimation and inference ‌ Youyi Fong, Ying Huang, Peter B. Gilbert, Sallie R. Permar

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Predicting neutralization susceptibility to combination HIV-1 monoclonal broadly neutralizing antibody regimens. ‌ Brian D Williamson, Liana Wu, Yunda Huang, Aaron Hudson, Peter B Gilbert

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FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells. ‌ Xinxia Peng, Shuying S Li, Peter B Gilbert, Daniel E Geraghty, Michael G Katze

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HAI and NAI titer correlates of inactivated and live attenuated influenza vaccine efficacy ‌ Peter B Gilbert, Youyi Fong, Michal Juraska, Lindsay N Carpp, Arnold S Monto, Emily T Martin, Joshua G Petrie

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Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention. ‌ Bryan T Mayer, Allan C deCamp, Yunda Huang, Joshua T Schiffer, Raphael Gottardo, Peter B Gilbert, Daniel B Reeves

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HIV-specific probabilistic models of protein evolution. ‌ David C Nickle, Laura Heath, Mark A Jensen, Peter B Gilbert, James I Mullins, Sergei L Kosakovsky Pond

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Immune-correlates analysis of an HIV-1 vaccine efficacy trial reveals an association of nonspecific interferon-γ secretion with increased HIV-1 infection risk: a cohort-based model... ‌ Yunda Huang, Ann Duerr, Nicole Frahm, Lily Zhang, Zoe Moodie, Steve De Rosa, M Juliana McElrath, Peter B Gilbert

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Application of the SLAPNAP statistical learning tool to broadly neutralizing antibody HIV prevention research ‌ Brian D. Williamson, Craig A. Magaret, Shelly Karuna, Lindsay N. Carpp, Huub C. Gelderblom, Yunda Huang, David Benkeser, Peter B. Gilbert

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Rapidly identifying new coronavirus mutations of potential concern in the Omicron variant using an unsupervised learning strategy ‌ Lue Ping Zhao, Terry P. Lybrand, Peter B. Gilbert, Thomas H. Payne, Chul-Woo Pyo, Daniel E. Geraghty, Keith R. Jerome

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Modeling cumulative overall prevention efficacy for the VRC01 phase 2b efficacy trials ‌ Yunda Huang, Shelly Karuna, Lindsay N. Carpp, Daniel Reeves, Amarendra Pegu, Kelly Seaton, Kenneth Mayer, Joshua Schiffer, John Mascola, Peter B. Gilbert

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Peptide Targeted by Human Antibodies Associated with HIV Vaccine-Associated Protection Assumes a Dynamic α-Helical Structure. ‌ Mohammed S Aiyegbo, Evgeny Shmelkov, Lorenzo Dominguez, Michael Goger, Shibani Battacharya, Allan C deCamp, Peter B Gilbert, Phillip W Berman, Timothy Cardozo

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Correlates of Protection, Thresholds of Protection, and Immunobridging among Persons with SARS-CoV-2 Infection ‌ David S. Khoury, Timothy E. Schlub, Deborah Cromer, Megan Steain, Youyi Fong, Peter B. Gilbert, Kanta Subbarao, James A. Triccas, Stephen J. Kent, Miles P. Davenport

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Vaccine-Induced Antibodies Mediate Higher Antibody-Dependent Cellular Cytotoxicity After Interleukin-15 Pretreatment of Natural Killer Effector Cells ‌ Leigh Fisher, Melissa Zinter, Sherry Stanfield-Oakley, Lindsay N. Carpp, R. Whitney Edwards, R. Whitney Edwards, Thomas Denny, Zoe Moodie, Fatima Laher, Linda-Gail Bekker, M. Juliana McElrath, Peter B. Gilbert, Peter B. Gilbert, Lawrence Corey, Georgia Tomaras, Georgia Tomaras, Georgia Tomaras, Georgia Tomaras, Justin Pollara, Justin Pollara, Guido Ferrari, Guido Ferrari, Guido Ferrari

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Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease. ‌ Chloé Pasin, M Elizabeth Halloran, Peter B Gilbert, Edith Langevin, R Leon Ochiai, Punnee Pitisuttithum, Maria Rosario Capeding, Gabriel Carrasquilla, Carina Frago, Margarita Cortés, Laurent Chambonneau, Zoe Moodie

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Tracking SARS-CoV-2 Spike Protein Mutations in the United States (January 2020—March 2021) Using a Statistical Learning Strategy ‌ Lue Ping Zhao, Terry P. Lybrand, Peter B. Gilbert, Thomas R. Hawn, Joshua T. Schiffer, Leonidas Stamatatos, Thomas H. Payne, Lindsay N. Carpp, Daniel E. Geraghty, Keith R. Jerome

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Pooled-Peptide Epitope Mapping Strategies Are Efficient and Highly Sensitive: An Evaluation of Methods for Identifying Human T Cell Epitope Specificities in Large-Scale HIV Vaccine... ‌ Andrew Fiore-Gartland, Bryce A Manso, David P Friedrich, Erin E Gabriel, Greg Finak, Zoe Moodie, Tomer Hertz, Stephen C De Rosa, Nicole Frahm, Peter B Gilbert, M Juliana McElrath

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Stochastic interventional approach to assessing immune correlates of protection: Application to the COVE messenger RNA-1273 vaccine trial ‌ Nima S. Hejazi, Xiaoying Shen, Lindsay N. Carpp, David Benkeser, Dean Follmann, Holly E. Janes, Lindsey R. Baden, Hana M. El Sahly, Weiping Deng, Honghong Zhou, Brett Leav, David C. Montefiori, Peter B. Gilbert

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GeM-LR: Discovering predictive biomarkers for small datasets in vaccine studies. ‌ Lin Lin, Rachel L Spreng, Kelly E Seaton, S Moses Dennison, Lindsay C Dahora, Daniel J Schuster, Sheetal Sawant, Peter B Gilbert, Youyi Fong, Neville Kisalu, Andrew J Pollard, Georgia D Tomaras, Jia Li

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