A comparative genomics approach to identifying the plasticity transcriptome by Schwartz Russell, Pfenning Andreas R, Barth Alison L

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Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease by Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis

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High-throughput functional comparison of promoter and enhancer activities by Nguyen, Thomas A., Jones, Richard D., Snavely, Andrew R., Pfenning, Andreas R., Kirchner, Rory, Hemberg, Martin, Gray, Jesse M.

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Rate of brain aging and APOE ε4 are synergistic risk factors for Alzheimer’s disease by Glorioso, Christin A, Pfenning, Andreas R, Lee, Sam S, Bennett, David A, Sibille, Etienne L, Kellis, Manolis, Guarente, Leonard P

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Rate of brain aging and APOE ε4 are synergistic risk factors for Alzheimer’s disease by Glorioso, Christin A., Pfenning, Andreas R, Lee, Sam S, Bennett, David A, Sibille, Etienne L, Kellis, Manolis, Guarente, Leonard Pershing

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Cell type-specific histone acetylation profiling of Alzheimer’s disease subjects and integration with genetics by Ramamurthy, Easwaran, Welch, Gwyneth, Cheng, Jemmie, Yuan, Yixin, Gunsalus, Laura, Bennett, David A, Tsai, Li-Huei, Pfenning, Andreas R

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Core and region-enriched networks of behaviorally regulated genes and the singing genome by Whitney, Osceola, Pfenning, Andreas R., Howard, Jason T., Blatti, Charles A., Liu, Fang, Ward, James M., Wang, Rui, Audet, Jean-Nicolas, Kellis, Manolis, Mukherjee, Sayan, Sinha, Saurabh, Hartemink, Alexander J., West, Anne E., Jarvis, Erich D.

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Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes by Madabhushi, Ram, Pfenning, Andreas R., Gao, Fan, Pan, Ling, Yamakawa, Satoko, Seo, Jinsoo, Rueda IV, Richard, Phan, Trongha, Yamakawa, Hidekuni, Pao, Ping-Chieh, Stott, Ryan T, Gjoneska, Elizabeta, Nott, Alexander, Cho, Sukhee, Kellis, Manolis, Tsai, Li-Huei

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Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration by Welch, Gwyneth M, Boix, Carles A, Schmauch, Eloi, Davila-Velderrain, Jose, Victor, Matheus B, Dileep, Vishnu, Bozzelli, P Lorenzo, Su, Qiao, Cheng, Jemmie D, Lee, Audrey, Leary, Noelle S, Pfenning, Andreas R, Kellis, Manolis, Tsai, Li-Huei

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Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer’s human brains by Klein, Hans-Ulrich, McCabe, Cristin, Gjoneska, Elizabeta, Sullivan, Sarah E, Kaskow, Belinda J, Tang, Anna, Smith, Robert V, Xu, Jishu, Pfenning, Andreas R, Bernstein, Bradley E, Meissner, Alexander, Schneider, Julie A, Mostafavi, Sara, Tsai, Li-Huei, Young-Pearse, Tracy L, Bennett, David A, De Jager, Philip L

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Integrative analysis of 111 reference human epigenomes by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ward, Lucas D., Sarkar, Abhishek Kulshreshtha, Quon, Gerald, Eaton, Matthew Lucas, Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Bansal, Mukul S., Kim, Ah Ram, Cowper Sal-lari, Richard, Sinnott-Armstrong, Nicholas A., Gjoneska, Elizabeta, Tsai, Li-Huei, Kellis, Manolis, Feizi- Khankandi, Soheil, Boyer, Laurie Ann

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