"A re-evaluation of M. prototuberculosis": continuing the debate. by Sylvain Brisse, Philip Supply, Roland Brosch, Veronique Vincent, M Cristina Gutierrez

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Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis. by M Cristina Gutierrez, Sylvain Brisse, Roland Brosch, Michel Fabre, Bahia Omaïs, Magali Marmiesse, Philip Supply, Veronique Vincent

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Set-up and validation of mycobacterial interspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) analysis of Mycobacterium tuberculosis using BioNumerics software. by Mathias Klok Pedersen, Aase Bengaard Andersen, Dorte Bek Folkvardsen, Erik Michael Rasmussen, Erik Svensson, Troels Lillebaek, Philip Supply

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From multidrug- to extensively drug-resistant tuberculosis: upward trends as seen from a 15-year nationwide study. by Karolien Stoffels, Caroline Allix-Béguec, Guido Groenen, Maryse Wanlin, Dirk Berkvens, Vanessa Mathys, Philip Supply, Maryse Fauville-Dufaux

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Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation. by Florence Levillain, Yannick Poquet, Ludovic Mallet, Serge Mazères, Michael Marceau, Roland Brosch, Franz-Christoph Bange, Philip Supply, Axel Magalon, Olivier Neyrolles

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Tuberculosis transmission among immigrants and autochthonous populations of the eastern province of Saudi Arabia. by Bright Varghese, Philip Supply, Mohammed Shoukri, Caroline Allix-Beguec, Ziad Memish, Naila Abuljadayel, Raafat Al-Hakeem, Fahad AlRabiah, Sahal Al-Hajoj

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Predominance of Ancestral Lineages of Mycobacterium tuberculosis in India by M. Cristina Gutierrez, Niyaz Ahmed, Eve Willery, Sujatha Narayanan, Seyed E. Hasnain, Devendra S. Chauhan, Vishwa M. Katoch, Véronique Vincent, Camille Locht, Philip Supply

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Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species. by Konstantinos Papadimitriou, Rania Anastasiou, Eleni Maistrou, Thomas Plakas, Nikos C Papandreou, Stavros J Hamodrakas, Stéphanie Ferreira, Philip Supply, Pierre Renault, Bruno Pot, Effie Tsakalidou

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Molecular Typing of Mycobacterium Tuberculosis Complex by 24-Locus Based MIRU-VNTR Typing in Conjunction with Spoligotyping to Assess Genetic Diversity of Strains Circulating in Mo... by Nada Bouklata, Philip Supply, Sanae Jaouhari, Reda Charof, Fouad Seghrouchni, Khalid Sadki, Youness El Achhab, Chakib Nejjari, Abdelkarim Filali-Maltouf, Ouafae Lahlou, Rajae El Aouad

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Newly Identified Mycobacterium africanum Lineage 10, Central Africa by Christophe Guyeux, Gaetan Senelle, Adrien Le Meur, Philip Supply, Cyril Gaudin, Jody E. Phelan, Taane G Clark, Leen Rigouts, Bouke de Jong, Christophe Sola, Guislaine Refrégier

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Origin, spread and demography of the Mycobacterium tuberculosis complex. by Thierry Wirth, Falk Hildebrand, Caroline Allix-Béguec, Florian Wölbeling, Tanja Kubica, Kristin Kremer, Dick van Soolingen, Sabine Rüsch-Gerdes, Camille Locht, Sylvain Brisse, Axel Meyer, Philip Supply, Stefan Niemann

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Drug-Resistant Tuberculosis, Lebanon, 2016 – 2017 by Salam El Achkar, Christine Demanche, Marwan Osman, Rayane Rafei, Mohamad Bachar Ismail, Hiam Yaacoub, Claire Pinçon, Stéphanie Duthoy, Frédérique De Matos, Cyril Gaudin, Alberto Trovato, Daniela M. Cirillo, Monzer Hamze, Philip Supply

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Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia by Matthias Merker, Maxime Barbier, Helen Cox, Jean-Philippe Rasigade, Silke Feuerriegel, Thomas Andreas Kohl, Roland Diel, Sonia Borrell, Sebastien Gagneux, Vladyslav Nikolayevskyy, Sönke Andres, Ulrich Nübel, Philip Supply, Thierry Wirth, Stefan Niemann

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The forest behind the tree: phylogenetic exploration of a dominant Mycobacterium tuberculosis strain lineage from a high tuberculosis burden country. by Maranibia Cardoso Oelemann, Harrison M Gomes, Eve Willery, Lia Possuelo, Karla Valéria Batista Lima, Caroline Allix-Béguec, Camille Locht, Yves-Olivier L Goguet de la Salmonière, Maria Cristina Gutierrez, Philip Suffys, Philip Supply

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Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres. by Emily Lai-Ho MacLean, Paolo Miotto, Lice González Angulo, Matteo Chiacchiaretta, Timothy M Walker, Martina Casenghi, Camilla Rodrigues, Timothy C Rodwell, Philip Supply, Emmanuel André, Mikashmi Kohli, Morten Ruhwald, Daniela Maria Cirillo, Nazir Ismail, Matteo Zignol

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Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis by Matthias Merker, Jean-Philippe Rasigade, Maxime Barbier, Helen Cox, Silke Feuerriegel, Thomas A. Kohl, Egor Shitikov, Kadri Klaos, Cyril Gaudin, Rudy Antoine, Roland Diel, Sonia Borrell, Sebastien Gagneux, Vladyslav Nikolayevskyy, Sönke Andres, Valeriu Crudu, Philip Supply, Stefan Niemann, Thierry Wirth

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A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region by Jean Claude Semuto Ngabonziza, Chloé Loiseau, Michael Marceau, Agathe Jouet, Fabrizio Menardo, Oren Tzfadia, Rudy Antoine, Esdras Belamo Niyigena, Wim Mulders, Kristina Fissette, Maren Diels, Cyril Gaudin, Stéphanie Duthoy, Willy Ssengooba, Emmanuel André, Michel K. Kaswa, Yves Mucyo Habimana, Daniela Brites, Dissou Affolabi, Jean Baptiste Mazarati, Bouke Catherine de Jong, Leen Rigouts, Sebastien Gagneux, Conor Joseph Meehan, Philip Supply

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A smooth tubercle bacillus from Ethiopia phylogenetically close to the Mycobacterium tuberculosis complex by Bazezew Yenew, Arash Ghodousi, Getu Diriba, Ephrem Tesfaye, Andrea Maurizio Cabibbe, Misikir Amare, Shewki Moga, Ayinalem Alemu, Binyam Dagne, Waganeh Sinshaw, Hilina Mollalign, Abyot Meaza, Mengistu Tadesse, Dinka Fikadu Gamtesa, Yeshiwork Abebaw, Getachew Seid, Betselot Zerihun, Melak Getu, Matteo Chiacchiaretta, Cyril Gaudin, Michael Marceau, Xavier Didelot, Getachew Tolera, Saro Abdella, Abebaw Kebede, Muluwork Getahun, Zemedu Mehammed, Philip Supply, Daniela Maria Cirillo

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Hi-plex deep amplicon sequencing for identification, high-resolution genotyping and multidrug resistance prediction of Mycobacterium leprae directly from patient biopsies by using... by Agathe Jouet, Sofie Marijke Braet, Cyril Gaudin, Gaëlle Bisch, Sidra Vasconcellos, Rebecca Emmanuela Epaminondas Nicacio de Oliveira do Livramento, Yrneh Yadamis Prado Palacios, Amanda Brum Fontes, Norma Lucena, Patricia Rosa, Milton Moraes, Kevin La, Nelly Badalato, Esteban Lenoir, Alice Ferré, Marie Clément, Epco Hasker, Silahi Halifa Grillone, Wirdane Abdou, Aouladi Said, Younoussa Assoumani, Nissad Attoumani, Yannick Laurent, Emmanuelle Cambau, Bouke Catherine de Jong, Philip Noël Suffys, Philip Supply

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Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe [version 1; peer review: 2 approved, 1 approved with reservations] by Martin Hunt, Phelim Bradley, Simon Grandjean Lapierre, Simon Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M. Walker, Daniela M. Cirillo, Iñaki Comas, Maha R. Farhat, Phillip Fowler, Jennifer Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed Vally Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark Wilcox, Irena Arandjelovic, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal

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