Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data by Pierre R. Bushel, Pierre R. Bushel, Pierre R. Bushel, Stephen S. Ferguson, Sreenivasa C. Ramaiahgari, Richard S. Paules, Scott S. Auerbach

Get full text

Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences by Pierre R. Bushel, Weida Tong

Get full text

The impact of classification of interest on predictive toxicogenomics by Pierre R. Bushel, Robnet T Kerns

Get full text

Toxicogenomics profiling of bone marrow from rats treated with topotecan in combination with oxaliplatin: a mechanistic strategy to inform combination toxicity by Myrtle eDavis, Jianying eLi, Jianying eLi, Elaine eKnight, Kellye K Daniels, Pierre R. Bushel, Pierre R. Bushel

Get full text

Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis by Birandra K. Sinha, Erik J. Tokar, Pierre R. Bushel

Get full text

Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification by Lingkang Huang, Hao Helen Zhang, Zhao-Bang Zeng, Pierre R. Bushel

Get full text

Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification by Lingkang Huang, Hao Helen Zhang, Zhao-Bang Zeng, Pierre R. Bushel

Get full text

Crosstalk between Receptor and Non-receptor Mediated Chemical Modes of Action in Rat Livers Converges through a Dysregulated Gene Expression Network at Tumor Suppressor Tp53 by Karen M. Funderburk, Karen M. Funderburk, Scott S. Auerbach, Pierre R. Bushel

Get full text

Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology by Pierre R. Bushel, James Ward, Adam Burkholder, Jianying Li, Benedict Anchang

Get full text

Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040 by Birandra K. Sinha, Erik J. Tokar, Jianying Li, Pierre R. Bushel

Get full text

Structural Equation Modeling of In silico Perturbations by Jianying Li, Jianying Li, Jianying Li, Pierre R. Bushel, Pierre R. Bushel, Lin Lin, Lin Lin, Kevin Day, Tianyuan Wang, Tianyuan Wang, Francesco J. DeMayo, San-Pin Wu, Jian-Liang Li

Get full text

RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database by Pierre R. Bushel, Florian Caiment, Han Wu, Raegan O’Lone, Frank Day, John Calley, Aaron Smith, Jianying Li

Get full text

Global transcriptome and deletome profiles of yeast exposed to transition metals. by Yong Hwan Jin, Paul E Dunlap, Sandra J McBride, Hanan Al-Refai, Pierre R Bushel, Jonathan H Freedman

Get full text

Gene expression in uterine leiomyoma from tumors likely to be growing (from black women over 35) and tumors likely to be non-growing (from white women over 35). by Barbara J Davis, John I Risinger, Gadisetti V R Chandramouli, Pierre R Bushel, Donna Day Baird, Shyamal D Peddada

Get full text

Identification of identical transcript changes in liver and whole blood during acetaminophen toxicity by Liwen eZhang, Liwen eZhang, Pierre R. Bushel, Jeff eChou, Tong eZhou, Tong eZhou, Paul Brent Watkins, Paul Brent Watkins

Get full text

Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells by Christopher G. Duncan, Hrisavgi D. Kondilis-Mangum, Sara A. Grimm, Pierre R. Bushel, Kaliopi Chrysovergis, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade

Get full text

A hybrid gene selection approach to create the S1500+ targeted gene sets for use in high-throughput transcriptomics. by Deepak Mav, Ruchir R Shah, Brian E Howard, Scott S Auerbach, Pierre R Bushel, Jennifer B Collins, David L Gerhold, Richard S Judson, Agnes L Karmaus, Elizabeth A Maull, Donna L Mendrick, B Alex Merrick, Nisha S Sipes, Daniel Svoboda, Richard S Paules

Get full text

DNA methylation in mice is influenced by genetics as well as sex and life experience by Sara A. Grimm, Takashi Shimbo, Motoki Takaku, James W. Thomas, Scott Auerbach, Brian D. Bennett, John R. Bucher, Adam B. Burkholder, Frank Day, Ying Du, Christopher G. Duncan, John E. French, Julie F. Foley, Jianying Li, B. Alex Merrick, Raymond R. Tice, Tianyuan Wang, Xiaojiang Xu, NISC Comparative Sequencing Program, Pierre R. Bushel, David C. Fargo, James C. Mullikin, Paul A. Wade

Get full text

A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency by Wendell Jones, Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd A. Richmond, Donald J. Johann, Halil Bisgin, Sayed Mohammad Ebrahim Sahraeian, Pierre R. Bushel, Mehdi Pirooznia, Katherine Wilkins, Marco Chierici, Wenjun Bao, Lee Scott Basehore, Anne Bergstrom Lucas, Daniel Burgess, Daniel J. Butler, Simon Cawley, Chia-Jung Chang, Guangchun Chen, Tao Chen, Yun-Ching Chen, Daniel J. Craig, Angela del Pozo, Jonathan Foox, Margherita Francescatto, Yutao Fu, Cesare Furlanello, Kristina Giorda, Kira P. Grist, Meijian Guan, Yingyi Hao, Scott Happe, Gunjan Hariani, Nathan Haseley, Jeff Jasper, Giuseppe Jurman, David Philip Kreil, Paweł Łabaj, Kevin Lai, Jianying Li, Quan-Zhen Li, Yulong Li, Zhiguang Li, Zhichao Liu, Mario Solís López, Kelci Miclaus, Raymond Miller, Vinay K. Mittal, Marghoob Mohiyuddin, Carlos Pabón-Peña, Barbara L. Parsons, Fujun Qiu, Andreas Scherer, Tieliu Shi, Suzy Stiegelmeyer, Chen Suo, Nikola Tom, Dong Wang, Zhining Wen, Leihong Wu, Wenzhong Xiao, Chang Xu, Ying Yu, Jiyang Zhang, Yifan Zhang, Zhihong Zhang, Yuanting Zheng, Christopher E. Mason, James C. Willey, Weida Tong, Leming Shi, Joshua Xu

Get full text