Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments by Zhang, Feng, Pinello, Luca

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Multi-scale chromatin state annotation using a hierarchical hidden Markov model by Huang, Jialiang, Glass, Kimberly, Pinello, Luca, Yuan, Guo-Cheng, Marco Rubio, Eugenio, Meuleman, Wouter, Wang, Jianrong, Kellis, Manolis

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CRISPR-SURF: discovering regulatory elements by deconvolution of CRISPR tiling screen data by Hsu, Jonathan Y., Fulco, Charles P., Farouni, Rick, Clement, Kendell, Engreitz, Jesse Michael, Lander, Eric Steven, Pinello, Luca

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Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing by Li, Carman Man-Chung, Shapiro, Hana, Tsiobikas, Christina, Selfors, Laura M, Chen, Huidong, Rosenbluth, Jennifer, Moore, Kaitlin, Gupta, Kushali P, Gray, G Kenneth, Oren, Yaara, Steinbaugh, Michael J, Guerriero, Jennifer L, Pinello, Luca, Regev, Aviv, Brugge, Joan S

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BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair by Hatchi, Elodie, Skourti-Stathaki, Konstantina, Ventz, Steffen, Pinello, Luca, Yen, Angela, Kamieniarz-Gdula, Kinga, Dimitrov, Stoil, Pathania, Shailja, McKinney, Kristine M., Kellis, Manolis, Hill, Sarah J., Parmigiani, Giovanni, Proudfoot, Nicholas J., Livingston, David M., Eaton, Matthew Lucas

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BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis by Canver, Matthew C., Smith, Elenoe C., Sher, Falak, Pinello, Luca, Shalem, Ophir, Chen, Diane D., Schupp, Patrick G., Vinjamur, Divya S., Garcia, Sara P., Luc, Sidinh, Kurita, Ryo, Nakamura, Yukio, Fujiwara, Yuko, Maeda, Takahiro, Yuan, Guo-Cheng, Zhang, Feng, Orkin, Stuart H., Bauer, Daniel E., Sanjana, Neville

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The histone demethylase UTX regulates the lineage-specific epigenetic program of invariant natural killer T cells by Beyaz, Semir, Kim, Ji Hyung, Pinello, Luca, Huang, Jialiang, Kerenyi, Marc A, Das, Partha P, Barnitz, R Anthony, Herault, Aurelie, Haining, W Nicholas, Passegue, Emmanuelle, Yuan, Guo-Cheng, Orkin, Stuart H, Winau, Florian, Xifaras, Michael, Dogum, Rizkullah, Yilmaz, Omer, Hu, Yu,M.C.P.Massachusetts Institute of Technology.

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High-fat diet enhances stemness and tumorigenicity of intestinal progenitors by Saadatpour, Assieh, Hong, Sue-Jean, Pinello, Luca, Katz, Yarden, Lamming, Dudley W., Guo, Guoji, Bell, George W., Selig, Martin, Nielsen, G. Petur, Gupta, Nitin, Ferrone, Cristina R., Deshpande, Vikram, Yuan, Guo-Cheng, Orkin, Stuart H., Beyaz, Semir, Mana, Miyeko, Roper, Jatin, Kedrin, Dmitriy, Bauer-Rowe, Khristian E., Xifaras, Michael, Akkad, Adam, Arias, Erika, Shinagare, Shweta, Abu-Remaileh, Monther, Dogum, Rizkullah, Sabatini, David, Yilmaz, Omer, Mihaylova, Maria M.

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