Severe SARS-CoV-2 Breakthrough Reinfection With Delta Variant After Recovery From Breakthrough Infection by Alpha Variant in a Fully Vaccinated Health Worker by Jayanthi Shastri, Swapneil Parikh, Veena Aggarwal, Sachee Agrawal, Nirjhar Chatterjee, Rajit Shah, Priti Devi, Priti Devi, Priyanka Mehta, Rajesh Pandey, Rajesh Pandey

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Protocol to decode the role of transcriptionally active microbes in SARS-CoV-2-positive patients using an RNA-seq-based approach by Aanchal Yadav, Priti Devi, Pallawi Kumari, Ranjeet Maurya, Uzma Shamim, Rajesh Pandey

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Dual RNA-Seq reveals transcriptionally active microbes (TAMs) dynamics in the serum of dengue patients associated with disease severity by Aanchal Yadav, Aanchal Yadav, Pallawi Kumari, Pallawi Kumari, Priti Devi, Priti Devi, Jorelle Jeanne B. Adjele, Jorelle Jeanne B. Adjele, Sandeep Budhiraja, Bansidhar Tarai, Rajesh Pandey, Rajesh Pandey

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Dysregulated metal ion homeostasis underscores non-canonical function of CD8+ T cell during COVID-19 by Kriti Khare, Kriti Khare, Partha Chattopadhyay, Partha Chattopadhyay, Priti Devi, Priti Devi, Priyanka Mehta, Priyanka Mehta, Aakarshan Raina, Chinky Shiu Chen Liu, Kishore Tardalkar, Meghnad G. Joshi, Rajesh Pandey, Rajesh Pandey

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Transcriptionally active nasopharyngeal commensals and opportunistic microbial dynamics define mild symptoms in the COVID 19 vaccination breakthroughs. by Priti Devi, Pallawi Kumari, Aanchal Yadav, Bansidhar Tarai, Sandeep Budhiraja, Uzma Shamim, Rajesh Pandey

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Longitudinal study across SARS-CoV-2 variants identifies transcriptionally active microbes (TAMs) associated with Delta severity by Priti Devi, Pallawi Kumari, Aanchal Yadav, Bansidhar Tarai, Sandeep Budhiraja, Uzma Shamim, Rajesh Pandey

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Metatranscriptomic insights into the dengue patient blood microbiome: Enhanced microbial diversity and metabolic activity in severe patients. by Aanchal Yadav, Priti Devi, Pallawi Kumari, Uzma Shamim, Bansidhar Tarai, Sandeep Budhiraja, Rajesh Pandey

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Learning From Biological and Computational Machines: Importance of SARS-CoV-2 Genomic Surveillance, Mutations and Risk Stratification by Shikha Bhat, Shikha Bhat, Anuradha Pandey, Anuradha Pandey, Akshay Kanakan, Ranjeet Maurya, Ranjeet Maurya, Janani Srinivasa Vasudevan, Priti Devi, Priti Devi, Partha Chattopadhyay, Partha Chattopadhyay, Shimpa Sharma, Rajesh J. Khyalappa, Meghnad G. Joshi, Rajesh Pandey, Rajesh Pandey

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SARS-CoV-2 Mutations and COVID-19 Clinical Outcome: Mutation Global Frequency Dynamics and Structural Modulation Hold the Key by Ranjeet Maurya, Ranjeet Maurya, Pallavi Mishra, Aparna Swaminathan, Varsha Ravi, Sheeba Saifi, Akshay Kanakan, Priyanka Mehta, Priti Devi, Priti Devi, Shaista Praveen, Sandeep Budhiraja, Bansidhar Tarai, Shimpa Sharma, Rajesh J. Khyalappa, Meghnad G. Joshi, Rajesh Pandey, Rajesh Pandey

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Exploring the influence of age and diet on gut microbiota development in children during the first 5 years: a study from Yaoundé, Cameroon by Jorelle Jeanne B. Adjele, Jorelle Jeanne B. Adjele, Priti Devi, Priti Devi, Pallawi Kumari, Pallawi Kumari, Aanchal Yadav, Aanchal Yadav, Alex D. Tchuenchieu Kamgain, Alex D. Tchuenchieu Kamgain, Hippolyte T. Mouafo, Gabriel N. Medoua, Justin J. N. Essia, Nar Singh Chauhan, Rajesh Pandey, Rajesh Pandey

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Single-cell multiomics revealed the dynamics of antigen presentation, immune response and T cell activation in the COVID-19 positive and recovered individuals by Partha Chattopadhyay, Partha Chattopadhyay, Kriti Khare, Kriti Khare, Manish Kumar, Manish Kumar, Pallavi Mishra, Alok Anand, Ranjeet Maurya, Ranjeet Maurya, Rohit Gupta, Shweta Sahni, Ayushi Gupta, Saruchi Wadhwa, Aanchal Yadav, Aanchal Yadav, Priti Devi, Priti Devi, Kishore Tardalkar, Meghnad Joshi, Tavpritesh Sethi, Rajesh Pandey, Rajesh Pandey

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Early transcriptomic host response signatures in the serum of dengue patients provides insights into clinical pathogenesis and disease severity by Aanchal Yadav, Uzma Shamim, Varsha Ravi, Priti Devi, Pallawi Kumari, Ranjeet Maurya, Poonam Das, Madhuri Somani, Sandeep Budhiraja, Bansidhar Tarai, Rajesh Pandey

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BA.1, BA.2 and BA.2.75 variants show comparable replication kinetics, reduced impact on epithelial barrier and elicit cross-neutralizing antibodies. by Janmejay Singh, Anbalagan Anantharaj, Aleksha Panwar, Chitra Rani, Monika Bhardwaj, Parveen Kumar, Partha Chattopadhyay, Priti Devi, Ranjeet Maurya, Pallavi Mishra, Anil Kumar Pandey, Rajesh Pandey, Guruprasad R Medigeshi

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LncRNAs harbouring regulatory motifs within repeat elements modulate immune response towards COVID‐19 disease severity and clinical outcomes by Partha Chattopadhyay, Pallavi Mishra, Kriti Khare, Aanchal Yadav, Priyanka Mehta, Sheeba Saifi, Aparna Swaminathan, Priti Devi, Shaista Parveen, Akansha Tyagi, Vinita Jha, Bansidhar Tarai, Sujeet Jha, Sandeep Budhiraja, Jitendra Narayan, Rajesh Pandey

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Increased Abundance of Achromobacter xylosoxidans and Bacillus cereus in Upper Airway Transcriptionally Active Microbiome of COVID-19 Mortality Patients Indicates Role of Co-Infect... by Priti Devi, Ranjeet Maurya, Priyanka Mehta, Uzma Shamim, Aanchal Yadav, Partha Chattopadhyay, Akshay Kanakan, Kriti Khare, Janani Srinivasa Vasudevan, Shweta Sahni, Pallavi Mishra, Akansha Tyagi, Sujeet Jha, Sandeep Budhiraja, Bansidhar Tarai, Rajesh Pandey

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Human‐host transcriptomic analysis reveals unique early innate immune responses in different sub‐phenotypes of COVID‐19 by Ranjeet Maurya, Uzma Shamim, Partha Chattopadhyay, Priyanka Mehta, Pallavi Mishra, Priti Devi, Aparna Swaminathan, Sheeba Saifi, Kriti Khare, Aanchal Yadav, Shaista Parveen, Pooja Sharma, Vivekanand A, Akansha Tyagi, Vinita Jha, Bansidhar Tarai, Sujeet Jha, Mohd Faruq, Sandeep Budhiraja, Rajesh Pandey

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Clinico-Genomic Analysis Reveals Mutations Associated with COVID-19 Disease Severity: Possible Modulation by RNA Structure by Priyanka Mehta, Shanmukh Alle, Anusha Chaturvedi, Aparna Swaminathan, Sheeba Saifi, Ranjeet Maurya, Partha Chattopadhyay, Priti Devi, Ruchi Chauhan, Akshay Kanakan, Janani Srinivasa Vasudevan, Ramanathan Sethuraman, Subramanian Chidambaram, Mashrin Srivastava, Avinash Chakravarthi, Johnny Jacob, Madhuri Namagiri, Varma Konala, Sujeet Jha, U. Deva Priyakumar, P. K. Vinod, Rajesh Pandey

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Vaccine Breakthrough Infections by SARS-CoV-2 Variants after ChAdOx1 nCoV-19 Vaccination in Healthcare Workers by Pratibha Kale, Ekta Gupta, Chhagan Bihari, Niharika Patel, Sheetalnath Rooge, Amit Pandey, Meenu Bajpai, Vikas Khillan, Partha Chattopadhyay, Priti Devi, Ranjeet Maurya, Neha Jha, Priyanka Mehta, Manish Kumar, Pooja Sharma, Sheeba Saifi, Aparna Swaminathan, Sarfaraz Alam, Bharathram Uppili, Mohammed Faruq, Anurag Agrawal, Rajesh Pandey, Shiv Kumar Sarin

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COVID-19 Risk Stratification and Mortality Prediction in Hospitalized Indian Patients: Harnessing clinical data for public health benefits by Shanmukh Alle, Akshay Kanakan, Samreen Siddiqui, Akshit Garg, Akshaya Karthikeyan, Priyanka Mehta, Neha Mishra, Partha Chattopadhyay, Priti Devi, Swati Waghdhare, Akansha Tyagi, Bansidhar Tarai, Pranjal Pratim Hazarik, Poonam Das, Sandeep Budhiraja, Vivek Nangia, Arun Dewan, Ramanathan Sethuraman, C. Subramanian, Mashrin Srivastava, Avinash Chakravarthi, Johnny Jacob, Madhuri Namagiri, Varma Konala, Debasish Dash, Tavpritesh Sethi, Sujeet Jha, Anurag Agrawal, Rajesh Pandey, P. K. Vinod, U. Deva Priyakumar

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COVID-19 Risk Stratification and Mortality Prediction in Hospitalized Indian Patients: Harnessing clinical data for public health benefits. by Shanmukh Alle, Akshay Kanakan, Samreen Siddiqui, Akshit Garg, Akshaya Karthikeyan, Priyanka Mehta, Neha Mishra, Partha Chattopadhyay, Priti Devi, Swati Waghdhare, Akansha Tyagi, Bansidhar Tarai, Pranjal Pratim Hazarik, Poonam Das, Sandeep Budhiraja, Vivek Nangia, Arun Dewan, Ramanathan Sethuraman, C Subramanian, Mashrin Srivastava, Avinash Chakravarthi, Johnny Jacob, Madhuri Namagiri, Varma Konala, Debasish Dash, Tavpritesh Sethi, Sujeet Jha, Anurag Agrawal, Rajesh Pandey, P K Vinod, U Deva Priyakumar

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