Early life immunity in the era of systems biology: understanding development and disease by Steven Schaffert, Purvesh Khatri

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Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology. by Laurynas Kalesinskas, Sanjana Gupta, Purvesh Khatri

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Host-response-based gene signatures for tuberculosis diagnosis: A systematic comparison of 16 signatures. by Hayley Warsinske, Rohit Vashisht, Purvesh Khatri

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Ten years of pathway analysis: current approaches and outstanding challenges. by Purvesh Khatri, Marina Sirota, Atul J Butte

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Assessing the Functional Bias of Commercial Microarrays Using the Onto-Compare Database by Sorin Draghici, Purvesh Khatri, Abhik Shah, Michael A. Tainsky

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A Multi-mRNA Prognostic Signature for Anti-TNFα Therapy Response in Patients with Inflammatory Bowel Disease by Suraj Sakaram, Yehudit Hasin-Brumshtein, Purvesh Khatri, Yudong D. He, Timothy E. Sweeney

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A machine learning classifier using 33 host immune response mRNAs accurately distinguishes viral and non-viral acute respiratory illnesses in nasal swab samples by Rushika Pandya, Yudong D. He, Timothy E. Sweeney, Yehudit Hasin-Brumshtein, Purvesh Khatri

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A robust gene expression signature for NASH in liver expression data by Yehudit Hasin-Brumshtein, Suraj Sakaram, Purvesh Khatri, Yudong D. He, Timothy E. Sweeney

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Multicohort Analysis Identifies Monocyte Gene Signatures to Accurately Monitor Subset-Specific Changes in Human Diseases by Francesco Vallania, Francesco Vallania, Liron Zisman, Liron Zisman, Liron Zisman, Claudia Macaubas, Shu-Chen Hung, Narendiran Rajasekaran, Sonia Mason, Jonathan Graf, Mary Nakamura, Elizabeth D. Mellins, Purvesh Khatri, Purvesh Khatri

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Prediction of HLA genotypes from single-cell transcriptome data by Benjamin D. Solomon, Hong Zheng, Hong Zheng, Laura W. Dillon, Jason D. Goldman, Jason D. Goldman, Jason D. Goldman, Christopher S. Hourigan, James R. Heath, James R. Heath, Purvesh Khatri, Purvesh Khatri

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Inferring direction of associations between histone modifications using a neural processes-based framework by Ananthakrishnan Ganesan, Denis Dermadi, Laurynas Kalesinskas, Michele Donato, Rosalie Sowers, Paul J. Utz, Purvesh Khatri

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Sex Differences in the Blood Transcriptome Identify Robust Changes in Immune Cell Proportions with Aging and Influenza Infection by Erika Bongen, Haley Lucian, Avani Khatri, Gabriela K. Fragiadakis, Zachary B. Bjornson, Garry P. Nolan, Paul J. Utz, Purvesh Khatri

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Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases by Francesco Vallania, Andrew Tam, Shane Lofgren, Steven Schaffert, Tej D. Azad, Erika Bongen, Winston Haynes, Meia Alsup, Michael Alonso, Mark Davis, Edgar Engleman, Purvesh Khatri

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Unique transcriptomic response to sepsis is observed among patients of different age groups. by Steven L Raymond, María Cecilia López, Henry V Baker, Shawn D Larson, Philip A Efron, Timothy E Sweeney, Purvesh Khatri, Lyle L Moldawer, James L Wynn

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Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations by Aurelie Tomczak, Jonathan M. Mortensen, Rainer Winnenburg, Charles Liu, Dominique T. Alessi, Varsha Swamy, Francesco Vallania, Shane Lofgren, Winston Haynes, Nigam H. Shah, Mark A. Musen, Purvesh Khatri

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RUNX1 loss renders hematopoietic and leukemic cells dependent on IL-3 and sensitive to JAK inhibition by Amy C. Fan, Yusuke Nakauchi, Lawrence Bai, Armon Azizi, Kevin A. Nuno, Feifei Zhao, Thomas Köhnke, Daiki Karigane, David Cruz-Hernandez, Andreas Reinisch, Purvesh Khatri, Ravindra Majeti

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A B-Cell Gene Signature Correlates With the Extent of Gluten-Induced Intestinal Injury in Celiac DiseaseSummary by Mitchell E. Garber, Alok Saldanha, Joel S. Parker, Wendell D. Jones, Katri Kaukinen, Kaija Laurila, Marja-Leena Lähdeaho, Purvesh Khatri, Chaitan Khosla, Daniel C. Adelman, Markku Mäki

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Prospective validation of an 11-gene mRNA host response score for mortality risk stratification in the intensive care unit by Andrew R. Moore, Jonasel Roque, Brian T. Shaller, Tola Asuni, Melissa Remmel, David Rawling, Oliver Liesenfeld, Purvesh Khatri, Jennifer G. Wilson, Joseph E. Levitt, Timothy E. Sweeney, Angela J. Rogers

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A novel blood-based assay for treatment monitoring of tuberculosis by Alexandra J. Zimmer, Samuel G. Schumacher, Erik Södersten, Anna Mantsoki, Romain Wyss, David H. Persing, Sara Banderby, Linda Strömqvist Meuzelaar, Jacqueline Prieto, Devasena Gnanashanmugam, Purvesh Khatri, Stefano Ongarello, Morten Ruhwald, Claudia M. Denkinger

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High-throughput quantitative histology in systemic sclerosis skin disease using computer vision by Chase Correia, Seamus Mawe, Shane Lofgren, Roberta G. Marangoni, Jungwha Lee, Rana Saber, Kathleen Aren, Michelle Cheng, Shannon Teaw, Aileen Hoffmann, Isaac Goldberg, Shawn E. Cowper, Purvesh Khatri, Monique Hinchcliff, J. Matthew Mahoney

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