A robust method for the amplification of RNA in the sense orientation by Quackenbush John, Marko Nicholas F, Frank Bryan, Lee Norman H

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GCOD - GeneChip Oncology Database by Gusenleitner Daniel, Antonescu Corina, White Joseph A, Liu Fenglong, Quackenbush John

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Gene expression profiling of lymphoblastoid cell lines from monozygotic twins discordant in severity of autism reveals differential regulation of neurologically relevant genes by Lee Norman H, Heine Shannon, Frank Bryan C, Hu Valerie W, Quackenbush John

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A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution by Quackenbush John, Nene Vishvanath, Liu Fenglong, Mullen Sean P, Danley Patrick D, Shaw Kerry L

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The limits of log-ratios by Yu Yan, Gaspard Renee, Hasseman Jeremy, Chen Emily, Frank Bryan, Kwong Ka, Sharov Vasily, Yang Ivana, Quackenbush John

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Data-driven normalization strategies for high-throughput quantitative RT-PCR by Suzuki Harukazu, Hayashizaki Yoshihide, Irvine Katharine M, Schroder Kate, Kimura Yasumasa, Mar Jessica C, Hume David, Quackenbush John

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Use of a multi-virus array for the study of human viral and retroviral pathogens: gene expression studies and ChIP-chip analysis by Lacoste Vincent, Yao Karen, Miller Naomi, de la Fuente Cynthia, Pumfery Anne, Ghedin Elodie, Quackenbush John, Jacobson Steven, Kashanchi Fatah

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Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation by Berrios, Christian, Padi, Megha, Park, Donglim Esther, Molla, Vadim, Cheng, Jingwei, Lee, Soo Mi, Stephanopoulos, Gregory, Quackenbush, John, DeCaprio, James A., Keibler, Mark Andrew

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Integrative and comparative genomics analysis of early hepatocellular carcinoma differentiated from liver regeneration in young and old by Ozand Pinar T, Goyns Malcolm H, Shoukri Mohamed M, Al-Qahtani Ahmed, Al-Bakheet Al-Bandary, Chishti Muhammad A, Colak Dilek, Quackenbush John, Park Ben H, Kaya Namik

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A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study by Fountzilas Elena, Kelly Andrew D, Perez-Atayde Antonio R, Goldsmith Jeffrey, Konstantinopoulos Panagiotis A, Francoeur Nancy, Correll Mick, Rubio Renee, Hu Lan, Gebhardt Mark C, Quackenbush John, Spentzos Dimitrios

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Moving beyond gene expression: identification of lung-disease-associated novel transcripts and alternative splicing by RNA sequencing by Brothers John, Kusko Rebecca, Liu Gang, Luo Lingqi, Guardela Brenda, Tedrow John, Alekesyev Yuriy, Yang Ivana V, Correll Mick, Geraci Mark, Quackenbush John, Sciurba Frank, Sebastiani Paola, Lenburg Marc, Kaminski Naftali, Schwartz David A, Spira Avrum, Beane Jennifer

The molecular portraits of breast tumors are conserved across microarray platforms by Perreard Laurent, Palazzo Juan P, Dreher Donna, Orrico Alejandra, Tretiakova Maria, Nanda Rita, Liu Yudong, Wu Junyuan, Sawyer Lynda R, Ewend Matthew G, Parker Joel, Nobel Andrew, Dressler Lynn, Reynolds Evangeline, Carey Lisa A, Livasy Chad, Qaqish Bahjat F, He Xiaping, Marron JS, Oh Daniel S, Fan Cheng, Hu Zhiyuan, Nelson Edward, Mone Mary, Hansen Heidi, Mullins Michael, Quackenbush John F, Ellis Matthew J, Olopade Olufunmilayo I, Bernard Philip S, Perou Charles M

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