The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data by Yan Guo, Shilin Zhao, Quanhu Sheng, David C Samuels, Yu Shyr

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RnaSeqSampleSize: real data based sample size estimation for RNA sequencing by Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr

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Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument. by Chengjian Tu, Jun Li, Shichen Shen, Quanhu Sheng, Yu Shyr, Jun Qu

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Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. by Yan Guo, Quanhu Sheng, Jiang Li, Fei Ye, David C Samuels, Yu Shyr

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538 Longitudinal transcriptomic local and peripheral changes are associated with immunotherapy resistance in murine model of triple negative breast cancer by Quanhu Sheng, Justin M Balko, Xiaopeng Sun, Susan Opalenik, Paula Gonzalez Ericsson, Ann Hanna, Emily N Tran

scDemultiplex: An iterative beta-binomial model-based method for accurate demultiplexing with hashtag oligos by Li-Ching Huang, Lindsey K. Stolze, Hua-Chang Chen, Alexander Gelbard, Yu Shyr, Qi Liu, Quanhu Sheng

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Regulation of human salt-sensitivite hypertension by myeloid cell renin-angiotensin-aldosterone system by Lale A. Ertuglu, Ashley Pitzer Mutchler, Fernando Elijovich, Cheryl L. Laffer, Quanhu Sheng, Celestine N. Wanjalla, Annet Kirabo

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Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples by Michael Chigaev, Hui Yu, David C. Samuels, Quanhu Sheng, Olufunmilola Oyebamiji, Scott Ness, Wei Yue, Ying-yong Zhao, Yan Guo

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Corrigendum: Genomic Positional Dissection of RNA Editomes in Tumor and Normal Samples by Michael Chigaev, Hui Yu, David C. Samuels, Quanhu Sheng, Olufunmilola Oyebamiji, Scott Ness, Wei Yue, Ying-yong Zhao, Yan Guo

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Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles by Jing Wang, Hua-Chang Chen, Quanhu Sheng, T. Renee Dawson, Robert J. Coffey, James G. Patton, Alissa M. Weaver, Yu Shyr, Qi Liu

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microRNA Expression Levels Change in Neonatal Patients During and After Exposure to Cardiopulmonary Bypass by Lance Hsieh, Lan N. Tu, Alison Paquette, Quanhu Sheng, Shilin Zhao, Douglas Bittel, James O’Brien, Kasey Vickers, Peter Pastuszko, Vishal Nigam

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Quantitative assessment of cell population diversity in single-cell landscapes. by Qi Liu, Charles A Herring, Quanhu Sheng, Jie Ping, Alan J Simmons, Bob Chen, Amrita Banerjee, Wei Li, Guoqiang Gu, Robert J Coffey, Yu Shyr, Ken S Lau

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p73 Is Required for Ovarian Follicle Development and Regulates a Gene Network Involved in Cell-to-Cell Adhesion by Gabriela L. Santos Guasch, J Scott Beeler, Clayton B. Marshall, Timothy M. Shaver, Quanhu Sheng, Kimberly N. Johnson, Kelli L. Boyd, Bryan J. Venters, Rebecca S. Cook, Jennifer A. Pietenpol

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Acquisition of aneuploidy drives mutant p53-associated gain-of-function phenotypes by Lindsay N. Redman-Rivera, Timothy M. Shaver, Hailing Jin, Clayton B. Marshall, Johanna M. Schafer, Quanhu Sheng, Rachel A. Hongo, Kathryn E. Beckermann, Ferrin C. Wheeler, Brian D. Lehmann, Jennifer A. Pietenpol

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Combined Dusp4 and p53 loss with Dbf4 amplification drives tumorigenesis via cell cycle restriction and replication stress escape in breast cancer by Ann Hanna, Mellissa J. Nixon, M. Valeria Estrada, Violeta Sanchez, Quanhu Sheng, Susan R. Opalenik, Abigail L. Toren, Joshua Bauer, Phillip Owens, Frank M. Mason, Rebecca S. Cook, Melinda E. Sanders, Carlos L. Arteaga, Justin M. Balko

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Comparative Transcriptomics of Ex Vivo, Patient-Derived Endothelial Cells Reveals Novel Pathways Associated With Type 2 Diabetes Mellitus by Joshua A. Beckman, MD, Sean P. Doherty, BA, Zachary B. Feldman, BA, Emily S. Banks, BS, Javid Moslehi, MD, Iris Z. Jaffe, MD, PhD, Naomi M. Hamburg, MD, Quanhu Sheng, PhD, Jonathan D. Brown, MD

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Clinical and genetic associations with prostacyclin response in pulmonary arterial hypertension by Stephen J. Halliday, Meng Xu, Timothy E. Thayer, Jonathan D. Mosley, Quanhu Sheng, Fei Ye, Eric H. Farber-Eger, Meredith E. Pugh, Ivan R. Robbins, Tufik R. Assad, James D. West, Evan L. Brittain, Anna R. Hemnes

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High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML by Yue Zhao, Qi Liu, Pankaj Acharya, Kristy R. Stengel, Quanhu Sheng, Xiaofan Zhou, Hojoong Kwak, Melissa A. Fischer, James E. Bradner, Stephen A. Strickland, Sanjay R. Mohan, Michael R. Savona, Bryan J. Venters, Ming-Ming Zhou, John T. Lis, Scott W. Hiebert

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Single cell analysis of cribriform prostate cancer reveals cell intrinsic and tumor microenvironmental pathways of aggressive disease by Hong Yuen Wong, Quanhu Sheng, Amanda B. Hesterberg, Sarah Croessmann, Brenda L. Rios, Khem Giri, Jorgen Jackson, Adam X. Miranda, Evan Watkins, Kerry R. Schaffer, Meredith Donahue, Elizabeth Winkler, David F. Penson, Joseph A. Smith, S. Duke Herrell, Amy N. Luckenbaugh, Daniel A. Barocas, Young J. Kim, Diana Graves, Giovanna A. Giannico, Jeffrey C. Rathmell, Ben H. Park, Jennifer B. Gordetsky, Paula J. Hurley

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Molecular signature incorporating the immune microenvironment enhances thyroid cancer outcome prediction by George J. Xu, Matthew A. Loberg, Jean-Nicolas Gallant, Quanhu Sheng, Sheau-Chiann Chen, Brian D. Lehmann, Sophia M. Shaddy, Megan L. Tigue, Courtney J. Phifer, Li Wang, Mario W. Saab-Chalhoub, Lauren M. Dehan, Qiang Wei, Rui Chen, Bingshan Li, Christine Y. Kim, Donna C. Ferguson, James L. Netterville, Sarah L. Rohde, Carmen C. Solórzano, Lindsay A. Bischoff, Naira Baregamian, Aaron C. Shaver, Mitra Mehrad, Kim A. Ely, Daniel W. Byrne, Thomas P. Stricker, Barbara A. Murphy, Jennifer H. Choe, Luciane T. Kagohara, Elizabeth M. Jaffee, Eric C. Huang, Fei Ye, Ethan Lee, Vivian L. Weiss

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