PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment by Qi Wang, Bryce Kille, Tian Rui Liu, R. A. Leo Elworth, Todd J. Treangen

Get full text

Synthetic DNA and biosecurity: Nuances of predicting pathogenicity and the impetus for novel computational approaches for screening oligonucleotides. by R A Leo Elworth, Christian Diaz, Jing Yang, Paul de Figueiredo, Krista Ternus, Todd Treangen

Get full text

De novo identification of microbial contaminants in low microbial biomass microbiomes with Squeegee by Yunxi Liu, R. A. Leo Elworth, Michael D. Jochum, Kjersti M. Aagaard, Todd J. Treangen

Get full text

KOMB: K-core based de novo characterization of copy number variation in microbiomes by Advait Balaji, Nicolae Sapoval, Charlie Seto, R.A. Leo Elworth, Yilei Fu, Michael G. Nute, Tor Savidge, Santiago Segarra, Todd J. Treangen

Get full text

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning by Advait Balaji, Bryce Kille, Anthony D. Kappell, Gene D. Godbold, Madeline Diep, R. A. Leo Elworth, Zhiqin Qian, Dreycey Albin, Daniel J. Nasko, Nidhi Shah, Mihai Pop, Santiago Segarra, Krista L. Ternus, Todd J. Treangen

Get full text

Current progress and open challenges for applying deep learning across the biosciences by Nicolae Sapoval, Amirali Aghazadeh, Michael G. Nute, Dinler A. Antunes, Advait Balaji, Richard Baraniuk, C. J. Barberan, Ruth Dannenfelser, Chen Dun, Mohammadamin Edrisi, R. A. Leo Elworth, Bryce Kille, Anastasios Kyrillidis, Luay Nakhleh, Cameron R. Wolfe, Zhi Yan, Vicky Yao, Todd J. Treangen

Get full text