Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis. by Francesca Cordero, Marco Beccuti, Maddalena Arigoni, Susanna Donatelli, Raffaele A Calogero

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Regulation of CD45 phosphatase by oncogenic ALK in anaplastic large cell lymphoma by Giulia Mura, Elif Karaca Atabay, Matteo Menotti, Cinzia Martinengo, Chiara Ambrogio, Chiara Ambrogio, Gloria Giacomello, Maddalena Arigoni, Maddalena Arigoni, Martina Olivero, Martina Olivero, Raffaele A. Calogero, Raffaele A. Calogero, Roberto Chiarle, Roberto Chiarle, Claudia Voena

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Sparsely Connected Autoencoders: A Multi-Purpose Tool for Single Cell omics Analysis by Luca Alessandri, Maria Luisa Ratto, Sandro Gepiro Contaldo, Marco Beccuti, Francesca Cordero, Maddalena Arigoni, Raffaele A. Calogero

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Correction: Mimicking p14ARF Phosphorylation Influences Its Ability to Restrain Cell Proliferation. by Maria Vivo, Michela Ranieri, Federica Sansone, Cristina Santoriello, Raffaele A. Calogero, Viola Calabrò, Alessandra Pollice, Girolama La Mantia

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Mimicking p14ARF phosphorylation influences its ability to restrain cell proliferation. by Maria Vivo, Michela Ranieri, Federica Sansone, Cristina Santoriello, Raffaele A Calogero, Viola Calabrò, Alessandra Pollice, Girolama La Mantia

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A single cell RNAseq benchmark experiment embedding “controlled” cancer heterogeneity by Maddalena Arigoni, Maria Luisa Ratto, Federica Riccardo, Elisa Balmas, Lorenzo Calogero, Francesca Cordero, Marco Beccuti, Raffaele A. Calogero, Luca Alessandri

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A computational approach based on the colored Petri net formalism for studying multiple sclerosis by Simone Pernice, Marzio Pennisi, Greta Romano, Alessandro Maglione, Santina Cutrupi, Francesco Pappalardo, Gianfranco Balbo, Marco Beccuti, Francesca Cordero, Raffaele A. Calogero

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CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications by Simone Alessandri, Maria L. Ratto, Sergio Rabellino, Gabriele Piacenti, Sandro Gepiro Contaldo, Simone Pernice, Marco Beccuti, Raffaele A. Calogero, Luca Alessandri

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A regulatory microRNA network controls endothelial cell phenotypic switch during sprouting angiogenesis by Stefania Rosano, Davide Corà, Sushant Parab, Serena Zaffuto, Claudio Isella, Roberta Porporato, Roxana Maria Hoza, Raffaele A Calogero, Chiara Riganti, Federico Bussolino, Alessio Noghero

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Erratum for Baddal et al., Dual RNA-seq of Nontypeable <named-content content-type="genus-species">Haemophilus influenzae</named-content> and Host Cell Transcriptomes Reveals Novel... by Buket Baddal, Alessandro Muzzi, Stefano Censini, Raffaele A. Calogero, Giulia Torricelli, Silvia Guidotti, Anna R. Taddei, Antonello Covacci, Mariagrazia Pizza, Rino Rappuoli, Marco Soriani, Alfredo Pezzicoli

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Learning from nature: pregnancy changes the expression of inflammation-related genes in patients with multiple sclerosis. by Francesca Gilli, Raija L P Lindberg, Paola Valentino, Fabiana Marnetto, Simona Malucchi, Arianna Sala, Marco Capobianco, Alessia di Sapio, Francesca Sperli, Ludwig Kappos, Raffaele A Calogero, Antonio Bertolotto

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MET Exon 14 Skipping: A Case Study for the Detection of Genetic Variants in Cancer Driver Genes by Deep Learning by Vladimir Nosi, Alessandrì Luca, Melissa Milan, Maddalena Arigoni, Silvia Benvenuti, Davide Cacchiarelli, Marcella Cesana, Sara Riccardo, Lucio Di Filippo, Francesca Cordero, Marco Beccuti, Paolo M. Comoglio, Raffaele A. Calogero

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Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma. by Alfonso Baldi, Maria Teresa Piccolo, Maria Rosaria Boccellino, Aldo Donizetti, Irene Cardillo, Raffaele La Porta, Lucio Quagliuolo, Enrico P Spugnini, Francesca Cordero, Gennaro Citro, Massimo Menegozzo, Raffaele A Calogero, Stefania Crispi

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Global gene expression profiling of human pleural mesotheliomas: identification of matrix metalloproteinase 14 (MMP-14) as potential tumour target. by Stefania Crispi, Raffaele A Calogero, Mario Santini, Pasquale Mellone, Bruno Vincenzi, Gennaro Citro, Giovanni Vicidomini, Silvia Fasano, Rosaria Meccariello, Gilda Cobellis, Simona Menegozzo, Riccardo Pierantoni, Francesco Facciolo, Alfonso Baldi, Massimo Menegozzo

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Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service by Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandri, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli

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Extracellular Vesicles Mediate Mesenchymal Stromal Cell-Dependent Regulation of B Cell PI3K-AKT Signaling Pathway and Actin Cytoskeleton by Annalisa Adamo, Jessica Brandi, Simone Caligola, Pietro Delfino, Riccardo Bazzoni, Roberta Carusone, Daniela Cecconi, Rosalba Giugno, Marcello Manfredi, Marcello Manfredi, Elisa Robotti, Emilio Marengo, Emilio Marengo, Giulio Bassi, Paul Takam Kamga, Giada Dal Collo, Alessandro Gatti, Angela Mercuri, Maddalena Arigoni, Martina Olivero, Raffaele A. Calogero, Mauro Krampera

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Different miRNA Profiles in Plasma Derived Small and Large Extracellular Vesicles from Patients with Neurodegenerative Diseases by Daisy Sproviero, Stella Gagliardi, Susanna Zucca, Maddalena Arigoni, Marta Giannini, Maria Garofalo, Martina Olivero, Michela Dell’Orco, Orietta Pansarasa, Stefano Bernuzzi, Micol Avenali, Matteo Cotta Ramusino, Luca Diamanti, Brigida Minafra, Giulia Perini, Roberta Zangaglia, Alfredo Costa, Mauro Ceroni, Nora I. Perrone-Bizzozero, Raffaele A. Calogero, Cristina Cereda

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<i>PIK3R1</i>^W624R Is an Actionable Mutation in High Grade Serous Ovarian Carcinoma by Concetta D’Ambrosio, Jessica Erriquez, Maddalena Arigoni, Sonia Capellero, Gloria Mittica, Eleonora Ghisoni, Fulvio Borella, Dionyssios Katsaros, Silvana Privitera, Marisa Ribotta, Elena Maldi, Giovanna Di Nardo, Enrico Berrino, Tiziana Venesio, Riccardo Ponzone, Marco Vaira, Douglas Hall, Mercedes Jimenez-Linan, Anna L. Paterson, Raffaele A. Calogero, James D. Brenton, Giorgio Valabrega, Maria Flavia Di Renzo, Martina Olivero

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Early stability and late random tumor progression of a HER2-positive primary breast cancer patient-derived xenograft by Lorena Landuzzi, Arianna Palladini, Claudio Ceccarelli, Sofia Asioli, Giordano Nicoletti, Veronica Giusti, Francesca Ruzzi, Marianna L. Ianzano, Laura Scalambra, Roberta Laranga, Tania Balboni, Maddalena Arigoni, Martina Olivero, Raffaele A. Calogero, Carla De Giovanni, Massimiliano Dall’Ora, Enrico Di Oto, Donatella Santini, Maria Pia Foschini, Maria Cristina Cucchi, Simone Zanotti, Mario Taffurelli, Patrizia Nanni, Pier-Luigi Lollini

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