Realistic three dimensional fitness landscapes generated by self organizing maps for the analysis of experimental HIV-1 evolution. by Ramón Lorenzo-Redondo, Soledad Delgado, Federico Morán, Cecilio Lopez-Galindez

Get full text

Challenges and Opportunities for Global Genomic Surveillance Strategies in the COVID-19 Era by Ted Ling-Hu, Estefany Rios-Guzman, Ramon Lorenzo-Redondo, Egon A. Ozer, Judd F. Hultquist

Get full text

Initial fitness recovery of HIV-1 is associated with quasispecies heterogeneity and can occur without modifications in the consensus sequence. by Antonio V Bordería, Ramon Lorenzo-Redondo, Maria Pernas, Concepción Casado, Tamara Alvaro, Esteban Domingo, Cecilio Lopez-Galindez

Get full text

Activity and inhibition of the SARS-CoV-2 Omicron nsp13 R392C variant using RNA duplex unwinding assays by Nicole L. Inniss, Margarita Rzhetskaya, Ted Ling-Hu, Ramon Lorenzo-Redondo, Kelly E. Bachta, Karla J.F. Satchell, Judd F. Hultquist

Get full text

ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes by Arghavan Alisoltani, Lukasz Jaroszewski, Adam Godzik, Arash Iranzadeh, Lacy M. Simons, Taylor J. Dean, Ramon Lorenzo-Redondo, Judd F. Hultquist, Egon A. Ozer

Get full text

Resurgence of SARS-CoV-2 Delta after Omicron variant superinfection in an immunocompromised pediatric patient by Arghavan Alisoltani, Lacy M. Simons, Maria Francesca Reyes Agnes, Taylor A. Heald-Sargent, William J. Muller, Larry K. Kociolek, Judd F. Hultquist, Ramon Lorenzo-Redondo, Egon A. Ozer

Get full text

Deviations in RSV epidemiological patterns and population structures in the United States following the COVID-19 pandemic by Estefany Rios-Guzman, Lacy M. Simons, Taylor J. Dean, Francesca Agnes, Anna Pawlowski, Arghavan Alisoltanidehkordi, Hannah H. Nam, Michael G. Ison, Egon A. Ozer, Ramon Lorenzo-Redondo, Judd F. Hultquist

Get full text

A clade of SARS-CoV-2 viruses associated with lower viral loads in patient upper airways by Ramon Lorenzo-Redondo, Hannah H. Nam, Scott C. Roberts, Lacy M. Simons, Lawrence J. Jennings, Chao Qi, Chad J. Achenbach, Alan R. Hauser, Michael G. Ison, Judd F. Hultquist, Egon A. Ozer

Get full text

Transcriptome-wide changes in gene expression, splicing, and lncRNAs in response to a live attenuated dengue virus vaccine by Eun-Young Kim, Yan Che, Hansi J. Dean, Ramon Lorenzo-Redondo, Michael Stewart, Caroline K. Keller, Daniel Whorf, Dawson Mills, Nikita N. Dulin, Tiffany Kim, Megan Votoupal, Miriam Walter, Ana Fernandez-Sesma, Heejin Kim, Steven M. Wolinsky

Get full text

Genomic characterization of SARS-CoV-2 in Guinea, West Africa by Mamadou Saliou Sow, Josue Togo, Lacy M. Simons, Souleymane Taran Diallo, Mohamed Lamine Magassouba, Mamadou Bhoye Keita, Anou Moise Somboro, Youssouf Coulibaly, Egon A. Ozer, Judd F. Hultquist, Robert Leo Murphy, Almoustapha Issiaka Maiga, Mamoudou Maiga, Ramon Lorenzo-Redondo

Get full text

Has Omicron Changed the Evolution of the Pandemic? by Alexander L Lundberg, Ramon Lorenzo-Redondo, Egon A Ozer, Claudia A Hawkins, Judd F Hultquist, Sarah B Welch, PV Vara Prasad, James F Oehmke, Chad J Achenbach, Robert L Murphy, Janine I White, Robert J Havey, Lori Ann Post

Get full text

Overlapping Delta and Omicron Outbreaks During the COVID-19 Pandemic: Dynamic Panel Data Estimates by Alexander L Lundberg, Ramon Lorenzo-Redondo, Judd F Hultquist, Claudia A Hawkins, Egon A Ozer, Sarah B Welch, P V Vara Prasad, Chad J Achenbach, Janine I White, James F Oehmke, Robert L Murphy, Robert J Havey, Lori A Post

Get full text

Permanent control of HIV-1 pathogenesis in exceptional elite controllers: a model of spontaneous cure by Concepcion Casado, Cristina Galvez, Maria Pernas, Laura Tarancon-Diez, Carmen Rodriguez, Víctor Sanchez-Merino, Mar Vera, Isabel Olivares, Rebeca De Pablo-Bernal, Alberto Merino-Mansilla, Jorge Del Romero, Ramon Lorenzo-Redondo, Ezequiel Ruiz-Mateos, María Salgado, Javier Martinez-Picado, Cecilio Lopez-Galindez

Get full text

TGF-β blockade drives a transitional effector phenotype in T cells reversing SIV latency and decreasing SIV reservoirs in vivo by Jinhee Kim, Deepanwita Bose, Mariluz Araínga, Muhammad R. Haque, Christine M. Fennessey, Rachel A. Caddell, Yanique Thomas, Douglas E. Ferrell, Syed Ali, Emanuelle Grody, Yogesh Goyal, Claudia Cicala, James Arthos, Brandon F. Keele, Monica Vaccari, Ramon Lorenzo-Redondo, Thomas J. Hope, Francois Villinger, Elena Martinelli

Get full text

Effective Prophylaxis of COVID-19 in Rhesus Macaques Using a Combination of Two Parenterally-Administered SARS-CoV-2 Neutralizing Antibodies by Brandon J. Beddingfield, Nicholas J. Maness, Nicholas J. Maness, Alyssa C. Fears, Jay Rappaport, Jay Rappaport, Pyone Pyone Aye, Kasi Russell-Lodrigue, Lara A. Doyle-Meyers, Robert V. Blair, Ann M. Carias, Patrick J. Madden, Ramon Lorenzo Redondo, Hongmei Gao, David Montefiori, David Montefiori, Thomas J. Hope, Chad J. Roy, Chad J. Roy

Get full text

Blockade of TGF-β signaling reactivates HIV-1/SIV reservoirs and immune responses in vivo by Sadia Samer, Yanique Thomas, Mariluz Araínga, Crystal Carter, Lisa M. Shirreff, Muhammad S. Arif, Juan M. Avita, Ines Frank, Michael D. McRaven, Christopher T. Thuruthiyil, Veli B. Heybeli, Meegan R. Anderson, Benjamin Owen, Arsen Gaisin, Deepanwita Bose, Lacy M. Simons, Judd F. Hultquist, James Arthos, Claudia Cicala, Irini Sereti, Philip J. Santangelo, Ramon Lorenzo-Redondo, Thomas J. Hope, Francois J. Villinger, Elena Martinelli

Get full text

SARS-CoV-2 mutant spectra as variant of concern nurseries: endless variation? by Brenda Martínez-González, Brenda Martínez-González, María Eugenia Soria, María Eugenia Soria, Pablo Mínguez, Pablo Mínguez, Pablo Mínguez, Ramón Lorenzo-Redondo, Llanos Salar-Vidal, Llanos Salar-Vidal, Alberto López-García, Mario Esteban-Muñoz, Antoni Durán-Pastor, Pilar Somovilla, Pilar Somovilla, Carlos García-Crespo, Ana Isabel de Ávila, Jordi Gómez, Jaime Esteban, Jaime Esteban, Ricardo Fernández-Roblas, Ricardo Fernández-Roblas, Ignacio Gadea, Ignacio Gadea, Esteban Domingo, Celia Perales, Celia Perales

Get full text

Serological Markers of SARS-CoV-2 Reinfection by Sameed M. Siddiqui, Kathryn A. Bowman, Alex L. Zhu, Stephanie Fischinger, Samuel Beger, Jenny S. Maron, Yannic C. Bartsch, Caroline Atyeo, Matthew J. Gorman, Ahmad Yanis, Judd F. Hultquist, Ramon Lorenzo-Redondo, Egon A. Ozer, Lacy M. Simons, Rana Talj, Danielle A. Rankin, Lindsay Chapman, Kyle Meade, Jordan Steinhart, Sean Mullane, Suzanne Siebert, Hendrik Streeck, Pardis Sabeti, Natasha Halasa, Elon R. Musk, Dan H. Barouch, Anil S. Menon, Eric J. Nilles, Douglas A. Lauffenburger, Galit Alter

Get full text