Probabilistic framework for genome-wide phylogeny and ortholog determination by Rasmussen, Matthew D. (Matthew David)

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Methods and analysis of genome-scale gene family evolution across multiple species by Rasmussen, Matthew D. (Matthew David)

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A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction by Rasmussen, Matthew D., Kellis, Manolis

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Unified Modeling of Gene Duplication, Loss, and Coalescence Using a Locus Tree by Rasmussen, Matthew D., Kellis, Manolis

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Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny by Wu, Yi-Chieh, Rasmussen, Matthew D., Kellis, Manolis

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Evolution at the Sub-gene Level: Domain Rearrangements in the Drosophila Phylogeny by Wu, Yi-Chieh, Rasmussen, Matthew D., Kellis, Manolis

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A comparative encyclopedia of DNA elements in the mouse genome by Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis

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Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees by Wu, Yi-Chieh, Bansal, Mukul S., Kellis, Manolis, Rasmussen, Matthew D.

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A High-Resolution Map of Human Evolutionary Constraint Using 29 Mammals by Mag Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Ward, Lucas D., Jungreis, Irwin, Rasmussen, Matthew D., Kellis, Manolis

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Roles of Major Facilitator Superfamily Transporters in Phosphate Response in Drosophila by Bergwitz, Clemens, Rasmussen, Matthew D., DeRobertis, Charles, Wee, Mark J., Sinha, Sumi, Chen, Hway H., Huang, Joanne, Perrimon, Norbert

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