Altered demographic profile of hospitalizations during the second COVID-19 wave in Amazonas, Brazil by Whittaker, C, Ratmann, O, Dye, CM, Sabino, EC, Faria, NR

HIV-1 sequence data coverage in Central East Africa from 1959 to 2013 by Lamers, S, Barbier, A, Ratmann, O, Fraser, C, Rose, R, Laeyendecker, O, Grabowski, M

Comparison of cluster-based and source-attribution methods for estimating transmission risk using large HIV sequence databases by Le Vu, S, Ratmann, O, Delpech, V, Brown, A, Gill, O, Tostevin, A, Fraser, C, Volz, E

HIV-1 transmission patterns in men who have sex with men: insights from genetic source attribution analysis. by Le Vu, S, Ratmann, O, Delpech, V, Brown, A, Gill, O, Tostevin, A, Dunn, D, Fraser, C, Volz, E

Intrinsic randomness in epidemic modelling beyond statistical uncertainty by Penn, MJ, Laydon, DJ, Penn, J, Whittaker, C, Morgenstern, C, Ratmann, O, Mishra, S, Pakkanen, MS, Donnelly, CA, Bhatt, S

PHYLOSCANNER: Inferring transmission from within- and petween-host pathogen genetic diversity. by Wymant, C, Hall, M, Ratmann, O, Bonsall, D, Golubchik, T, de Cesare, M, Gall, A, Cornelissen, M, Fraser, C

Assessment of COVID-19 as the underlying cause of death among children and young people aged 0 to 19 years in the US by Flaxman, S, Whittaker, C, Semenova, E, Rashid, T, Parks, RM, Blenkinsop, A, Unwin, HJT, Mishra, S, Bhatt, S, Gurdasani, D, Ratmann, O

Molecular epidemiology of HIV-1 subtype B reveals heterogeneous transmission risk: Implications for intervention and control by Volz, E, Le Vu, S, Ratmann, O, Tostevin, A, Dunn, D, Orkin, C, O'Shea, S, Delpech, V, Brown, A, Gill, N, Fraser, C

Hope Groups: a protocol for a cluster randomized controlled trial of psychosocial, mental health, and parenting support groups for Ukrainian caregivers during war and conflict by Tucker, S, Baldonado, N, Ruina, O, Ratmann, O, Flaxman, S, Bryn, L, Lachman, J, Taradaika, E, Melendez-Torres, GJ, Vallance, I, Goldman, P, Cluver, L, Hillis, S

Phylogenetic and demographic characterization of directed HIV-1 transmission using deep sequences from high-risk and general population cohorts/groups in Uganda by Bbosa, N, Ssemwanga, D, Ssekagiri, A, Xi, X, Mayanja, Y, Bahemuka, U, Seeley, J, Pillay, D, Abeler-Dörner, L, Golubchik, T, Fraser, C, Kaleebu, P, Ratmann, O, PANGEA Consortium

Under the radar: global minimum estimates for COVID-19-associated orphanhood and deaths among caregivers by Hillis, S, Unwin, HJT, Chen, Y, Cluver, L, Sherr, L, Goldman, PY, Ratmann, O, Donnelly, C, Bhatt, S, Villaveces, A, Butchart, A, Bachman, G, Rawlings, L, Green, P, Nelson, CA, Flaxman, S

COVID-19-associated orphanhood and caregiver death in the United States by Hillis, SD, Blenkinsop, A, Villaveces, A, Annor, FB, Liburd, L, Massetti, GM, Demissie, Z, Mercy, JA, Nelson, CA, Cluver, L, Flaxman, S, Sherr, L, Donnelly, C, Ratmann, O, Unwin, HJT

More than 5.2 million children affected by global surges in COVID-associated orphanhood and caregiver death: new evidence for national responses by Unwin, HJT, Hillis, S, Cluver, L, Flaxman, S, Goldman, P, Butchart, A, Bachman, G, Rawlings, L, Donnelly, C, Ratmann, O, Green, P, Nelson, C, Blenkinsop, A, Bhatt, S, Desmond, C, Villaveces, A, Sherr, L

High prevalence fishing communities are not a major sourceof new HIV infections to the inland populations in RakaiDistrict, Uganda: implications for geo-spatially targeted HIVpreve... by Ratmann, O, Grabowski, MK, Hall, M, Golubchik, T, Wymant, C, Kagaayi, J, Kigozi, G, Quinn, T, Wawer, M, Laeyendecker, O, Serwadda, D, Gray, R, Fraser, C, PANGEA-HIV Consortium, Rakai Health Sciences Program

Comparing the responses of the UK, Sweden and Denmark to COVID-19 using counterfactual modelling by Mishra, S, Scott, JA, Laydon, DJ, Flaxman, S, Gandy, A, Mellan, TA, Unwin, HJT, Vollmer, M, Coupland, H, Ratmann, O, Monod, M, Zhu, HH, Cori, A, Gaythorpe, KAM, Whittles, LK, Whittaker, C, Donnelly, C, Ferguson, NM, Bhatt, S

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study by Kim, S, Kigozi, G, Martin, MA, Galiwango, RM, Quinn, TC, Redd, AD, Ssekubugu, R, Bonsall, D, Ssemwanga, D, Rambaut, A, Herbeck, JT, Reynolds, SJ, Foley, B, Abeler-Dörner, L, Fraser, C, Ratmann, O, Kagaayi, J, Laeyendecker, O, Grabowski, MK

Pervasive and non-random recombination in near full-length HIV genomes from Uganda by Grant, HE, Hodcroft, EB, Ssemwanga, D, Kitayimbwa, JM, Yebra, G, Esquivel Gomez, LR, Frampton, D, Gall, A, Kellam, P, de Oliveira, T, Bbosa, N, Nsubuga, RN, Kibengo, F, Kwan, TH, Lycett, S, Kao, R, Robertson, DL, Ratmann, O, Fraser, C, Pillay, D, Kaleebu, P, Leigh Brown, AJ

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis by Ratmann, O, Grabowski, M, Hall, M, Golubchik, T, Wymant, C, Abeler-Dörner, L, Bonsall, D, Hoppe, A, Brown, A, De Oliveira, T, Gall, A, Kellam, P, Pillay, D, Kagaayi, J, Kigozi, G, Quinn, T, Wawer, M, Laeyendecker, O, Serwadda, D, Gray, R, Fraser, C, Pangea Consortium And Rakai Health Sciences Program

Age groups that sustain resurging COVID-19 epidemics in the United States by Monod, M, Blenkinsop, A, Xi, X, Hebert, D, Bershan, S, Tietze, S, Baguelin, M, Bradley, VC, Chen, Y, Coupland, H, Filippi, S, Ish-Horowicz, J, McManus, M, Mellan, T, Gandy, A, Hutchinson, M, Unwin, HJT, van Elsland, SL, Vollmer, MAC, Weber, S, Zhu, H, Bezancon, A, Ferguson, NM, Mishra, S, Flaxman, S, Bhatt, S, Ratmann, O

Phylogenetic tools for generalized HIV-1 epidemics: Findings from the PANGEA-HIV Methods Comparison. by Ratmann, O, Hodcroft, E, Pickles, M, Cori, A, Hall, M, Lycett, S, Colijn, C, Dearlove, B, Didelot, X, Frost, S, Hossain, A, Joy, J, Kendall, M, Kühnert, D, Leventhal, G, Liang, R, Plazzotta, G, Poon, A, Rasmussen, D, Stadler, T, Volz, E, Weis, C, Leigh Brown, A, Fraser, C, PANGEA-HIV Consortium