A general biological simulator: the multiscale object oriented simulation environment, MOOSE by Bhalla Upinder S, Dudani Niraj, Deshpande Raamesh, Ray Subhasis

Large-scale synapse-level neuronal wiring diagrams in silico and in vitro by Dudani Niraj, Deshpande Raamesh, Modi Mehrab, Dhawale Ashesh, Madhavan Radhika, Bhalla Upinder S, Ray Subhasis

NineML: the network interchange for n<b>e</b>uroscience modeling language by Muller Eilif, Morrison Abigail, Lo Chung-Chan, Le Franc Yann, Kriener Birgit, Hines Mike, Hill Sean, Plesser Hans, Gorchetchnikov Anatoli, Gleeson Padraig, Djurfeldt Mikael, De Schutter Erik, Davison Andrew, Cornelis Hugo, Clewley Robert, Cannon Robert, Raikov Ivan, Ray Subhasis, Schwabe Lars, Szatmary Botond