Joint genetic analysis of gene expression data with inferred cellular phenotypes. by Leopold Parts, Oliver Stegle, John Winn, Richard Durbin

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Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph by Rui Martiniano, Erik Garrison, Eppie R. Jones, Andrea Manica, Richard Durbin

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A Method for Checking Genomic Integrity in Cultured Cell Lines from SNP Genotyping Data. by Petr Danecek, Shane A McCarthy, HipSci Consortium, Richard Durbin

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A genome-wide survey of genetic variation in gorillas using reduced representation sequencing. by Aylwyn Scally, Bryndis Yngvadottir, Yali Xue, Qasim Ayub, Richard Durbin, Chris Tyler-Smith

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Efficient iterative Hi-C scaffolder based on N-best neighbors by Dengfeng Guan, Shane A. McCarthy, Zemin Ning, Guohua Wang, Yadong Wang, Richard Durbin

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Detecting archaic introgression using an unadmixed outgroup. by Laurits Skov, Ruoyun Hui, Vladimir Shchur, Asger Hobolth, Aylwyn Scally, Mikkel Heide Schierup, Richard Durbin

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Genetic interactions affecting human gene expression identified by variance association mapping by Andrew Anand Brown, Alfonso Buil, Ana Viñuela, Tuuli Lappalainen, Hou-Feng Zheng, J Brent Richards, Kerrin S Small, Timothy D Spector, Emmanouil T Dermitzakis, Richard Durbin

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Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes by Grégoire Vernaz, Milan Malinsky, Hannes Svardal, Mingliu Du, Alexandra M. Tyers, M. Emília Santos, Richard Durbin, Martin J. Genner, George F. Turner, Eric A. Miska

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Iron Age and Anglo-Saxon genomes from East England reveal British migration history by Stephan Schiffels, Wolfgang Haak, Pirita Paajanen, Bastien Llamas, Elizabeth Popescu, Louise Loe, Rachel Clarke, Alice Lyons, Richard Mortimer, Duncan Sayer, Chris Tyler-Smith, Alan Cooper, Richard Durbin

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Viral coinfection analysis using a MinHash toolkit by Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin

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Trait variation in yeast is defined by population history. by Jonas Warringer, Enikö Zörgö, Francisco A Cubillos, Amin Zia, Arne Gjuvsland, Jared T Simpson, Annabelle Forsmark, Richard Durbin, Stig W Omholt, Edward J Louis, Gianni Liti, Alan Moses, Anders Blomberg

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A high-quality, chromosome-level genome assembly of the Black Soldier Fly (<i>Hermetia illucens</i> L.) by Tomas N Generalovic, Shane A McCarthy, Ian A Warren, Jonathan M D Wood, James Torrance, Ying Sims, Michael Quail, Kerstin Howe, Miha Pipan, Richard Durbin, Chris D Jiggins

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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads by Marcela Uliano-Silva, João Gabriel R. N. Ferreira, Ksenia Krasheninnikova, Darwin Tree of Life Consortium, Giulio Formenti, Linelle Abueg, James Torrance, Eugene W. Myers, Richard Durbin, Mark Blaxter, Shane A. McCarthy

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Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association. by Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney

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Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association. by Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney

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De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms by Francesca Giordano, Louise Aigrain, Michael A Quail, Paul Coupland, James K Bonfield, Robert M Davies, German Tischler, David K Jackson, Thomas M Keane, Jing Li, Jia-Xing Yue, Gianni Liti, Richard Durbin, Zemin Ning

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High-resolution species assignment of Anopheles mosquitoes using k-mer distances on targeted sequences by Marilou Boddé, Alex Makunin, Diego Ayala, Lemonde Bouafou, Abdoulaye Diabaté, Uwem Friday Ekpo, Mahamadi Kientega, Gilbert Le Goff, Boris K Makanga, Marc F Ngangue, Olaitan Olamide Omitola, Nil Rahola, Frederic Tripet, Richard Durbin, Mara KN Lawniczak

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The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861) [version 1; peer review: 2 approved] by Iliana Bista, Shane A. McCarthy, Jonathan Wood, Zemin Ning, H. William Detrich III, Thomas Desvignes, John Postlethwait, William Chow, Kerstin Howe, James Torrance, Michelle Smith, Karen Oliver, Vertebrate Genomes Project Consortium, Eric A. Miska, Richard Durbin

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Patterns of cis regulatory variation in diverse human populations. by Barbara E Stranger, Stephen B Montgomery, Antigone S Dimas, Leopold Parts, Oliver Stegle, Catherine E Ingle, Magda Sekowska, George Davey Smith, David Evans, Maria Gutierrez-Arcelus, Alkes Price, Towfique Raj, James Nisbett, Alexandra C Nica, Claude Beazley, Richard Durbin, Panos Deloukas, Emmanouil T Dermitzakis

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The genome sequence of the eastern grey squirrel, Sciurus carolinensis Gmelin, 1788 [version 1; peer review: 2 approved] by Dan Mead, Kathryn Fingland, Rachel Cripps, Roberto Portela Miguez, Michelle Smith, Craig Corton, Karen Oliver, Jason Skelton, Emma Betteridge, Jale Doulcan, Michael A. Quail, Shane A. McCarthy, Kerstin Howe, Ying Sims, James Torrance, Alan Tracey, Richard Challis, Richard Durbin, Mark Blaxter

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