Sequences to systems by Kellis, Manolis, Rinn, John L.

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Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking by Kaewsapsak, Pornchai, Shechner, David Michael, Mallard, William, Rinn, John L, Ting, Alice Y

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Computational analysis of noncoding RNAs by Washietl, Stefan, Will, Sebastian, Hendrix, David A., Goff, Loyal, Rinn, John L., Berger, Bonnie, Kellis, Manolis

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Identification of proteins binding coding and non-coding human RNAs using protein microarrays by Siprashvili Zurab, Webster Dan E, Kretz Markus, Johnston Danielle, Rinn John L, Chang Howard Y, Khavari Paul A

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses by Cabili, Moran N., Trapnell, Cole, Goff, Loyal, Koziol, Magdalena J., Tazon-Vega, Barbara, Regev, Aviv, Rinn, John L.

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Chromatin signature of embryonic pluripotency is established during genome activation by Vastenhouw, Nadine L., Zhang, Yong, Woods, Ian G., Imam, Farhad, Regev, Aviv, Liu, X. Shirley, Rinn, John L., Schier, Alexander F.

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Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution by Cabili, Moran N, Dunagin, Margaret C, McClanahan, Patrick D, Biaesch, Andrew, Padovan-Merhar, Olivia, Regev, Aviv, Rinn, John L, Raj, Arjun

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Genomics in 2011: challenges and opportunities by Berger, Bonnie, Adams, David J., Harismendy, Olivier, Huttenhower, Curtis, Liu, X. Shirley, Myers, Chad L., Oshlack, Alicia, Rinn, John L., Walhout, Albertha J. M.

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Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis by Lin, Michael F., Regev, Aviv, Pauli, Andrea, Valen, Eivind, Garber, Manuel, Vastenhouw, Nadine L., Levin, Joshua Z., Fan, Lin, Sandelin, Albin, Rinn, John L., Schier, Alexander F.

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Mining data from 1000 genomes to identify the causal variant in regions under positive selection by Grossman, Sharon Rachel, Karlsson, Elinor K., Tabrizi, Shervin, Andersen, Kristian G., Rinn, John L., Lander, Eric S., Schaffner, Steve, Sabeti, Pardis C., 1000 Genomes Project Consortium, Shlyakhter, Ilya, 1975-

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Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs by Guttman, Mitchell, Garber, Manuel, Levin, Joshua Z., Donaghey, Julie, Robinson, James, Adiconis, Xian, Fan, Lin, Koziol, Magdalena J., Gnirke, Andreas, Nusbaum, Chad, Rinn, John L., Regev, Aviv, Lander, Eric Steven

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression by Presser, Aviva, Guttman, Mitchell, Raj, Arjun, van Oudenaarden, Alexander, Rinn, John L., Lander, Eric S., Regev, Aviv, Bernstein, Bradley E., Thomas, Kelly, Morales, Dianali Rivea, Garber, Manuel, Khalil, Ahmad M., Huarte, Maite

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Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons by Lodato, Simona, Zuccaro, Emanuela, Chen, Hsu-Hsin, Yuan, Wen, Meleski, Alyssa, Takahashi, Emi, Mahony, Shaun, Gifford, David K, Arlotta, Paola, Molyneaux, Bradley J., Goff, Loyal A., Rinn, John L., Gifford, David K.

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Long noncoding RNAs regulate adipogenesis by Sun, Lei, Goff, Loyal, Alexander, Ryan K., Lo, Kinyui Alice, Yuan, Bingbing B., Kellis, Manolis, Lodish, Harvey F., Trapnell, Cole, Hacisuleyman, Ezgi, Sauvageau, Martin, Tazon-Vega, Barbara, Kelley, David R., Hendrickson, David G., Rinn, John L.

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A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response by Huarte, Maite, Guttman, Mitchell, Feldser, David M., Garber, Manuel, Koziol, Magdalena J., Kenzelmann-Broz, Daniela, Khalil, Ahmad M., Zuk, Or, Amit, Ido, Rabani, Michal, Attardi, Laura D., Regev, Aviv, Rinn, John L., Lander, Eric Steven, Jacks, Tyler E

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A distant trophoblast-specific enhancer controls HLA-G expression at the maternal–fetal interface by Ferreira, Leonardo M. R., Meissner, Torsten B., Mikkelsen, Tarjei S., Mallard, William, O’Donnell, Charles W., Tilburgs, Tamara, Gomes, Hannah A. B., Camahort, Raymond, Sherwood, Richard I., Rinn, John L., Cowan, Chad A., Strominger, Jack L., Gifford, David K

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Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells by Guttman, Mitchell, Loewer, Sabine, Cabili, Moran N., Loh, Yuin-Han, Thomas, Kelly, Park, In Hyun, Garber, Manuel, Curran, Matthew, Onder, Tamer T., Agarwal, Suneet, Manos, Philip D., Datta, Sumon, Schlaeger, Thorsten M., Daley, George Q., Rinn, John L., Lander, Eric Steven

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lincRNAs act in the circuitry controlling pluripotency and differentiation by Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric Steven

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Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain by Goff, Loyal A., Groff, Abigail F., Sauvageau, Martin, Trayes-Gibson, Zachary, Sanchez-Gomez, Diana B., Morse, Michael, Martin, Ryan D., Elcavage, Lara E., Liapis, Stephen C., Gonzalez-Celeiro, Meryem, Plana, Olivia, Li, Eric, Gerhardinger, Chiara, Tomassy, Giulio S., Arlotta, Paola, Rinn, John L.

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Topological organization of multi-chromosomal regions by Firre by Hacisuleyman, Ezgi, Trapnell, Cole, Williams, Adam, Henao-Mejia, Jorge, Sun, Lei, McClanahan, Patrick, Hendrickson, David G., Sauvageau, Martin, Kelley, David R., Morse, Michael, Engreitz, Jesse Michael, Guttman, Mitchell, Flavell, Richard A., Raj, Arjun, Rinn, John L., Goff, Loyal, Lander, Eric Steven, Lodish, Harvey F

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