GenomePeek—an online tool for prokaryotic genome and metagenome analysis by Katelyn McNair, Robert A. Edwards

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Growth Score: a single metric to define growth in 96-well phenotype assays by Daniel A. Cuevas, Robert A. Edwards

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Inside or Outside: Detecting the Cellular Location of Bacterial Pathogens by Robert A. Edwards, Stanley R. Maloy

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How Metagenomics Has Transformed Our Understanding of Bacteriophages in Microbiome Research by Laura K. Inglis, Robert A. Edwards

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Increasing DNA Transfer Efficiency by Temporary Inactivation of Host Restriction by Robert A. Edwards, R. Allen Helm, Stanley R. Maloy

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Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes by Ramy Karam Aziz, Ramy Karam Aziz, Ramy Karam Aziz, Bhakti eDwivedi, Sajia eAkhter, Mya eBreitbart, Robert A Edwards, Robert A Edwards

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PRFect: a tool to predict programmed ribosomal frameshifts in prokaryotic and viral genomes by Katelyn McNair, Peter Salamon, Robert A. Edwards, Anca M. Segall

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Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics by Ellen Kuang, Matthew Marney, Daniel Cuevas, Robert A. Edwards, Erica M. Forsberg

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Organizing the bacterial annotation space with amino acid sequence embeddings by Susanna R. Grigson, Jody C. McKerral, James G. Mitchell, Robert A. Edwards

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Erratum for Cazares et al., “A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation” by Daniel Cazares, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa

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A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation by Daniel Cazares, Adrian Cazares, Wendy Figueroa, Gabriel Guarneros, Robert A. Edwards, Pablo Vinuesa

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FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares by Genivaldo Gueiros Z. Silva, Daniel A. Cuevas, Bas E. Dutilh, Robert A. Edwards

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Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes by Katelyn McNair, Carol L. Ecale Zhou, Brian Souza, Stephanie Malfatti, Robert A. Edwards

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Kullback Leibler divergence in complete bacterial and phage genomes by Sajia Akhter, Ramy K. Aziz, Mona T. Kashef, Eslam S. Ibrahim, Barbara Bailey, Robert A. Edwards

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Multivariate analysis of functional metagenomes by Elizabeth A. Dinsdale, Robert A. Edwards, Robert A. Edwards, Robert A. Edwards, Barbara eBailey, Imre eTuba, Sajia eAkhter, Katelyn eMcNair, Robert eSchmieder, Naneh eApkarian, Michelle eCreek, Eric eGuan, Mayra eHernandez, Katherine eIsaacs, Chris ePeterson, Todd eRegh, Vadim ePonomarenko

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Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii by Bhavya Papudeshi, Douglas B. Rusch, David VanInsberghe, Curtis M. Lively, Robert A. Edwards, Farrah Bashey

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Diversification of the Salmonella fimbriae: a model of macro- and microevolution. by Min Yue, Shelley C Rankin, Ryan T Blanchet, James D Nulton, Robert A Edwards, Dieter M Schifferli

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Classification Confidence in Exploratory Learning: A User’s Guide by Peter Salamon, David Salamon, V. Adrian Cantu, Michelle An, Tyler Perry, Robert A. Edwards, Anca M. Segall

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Predicting the capsid architecture of phages from metagenomic data by Diana Y. Lee, Caitlin Bartels, Katelyn McNair, Robert A. Edwards, Manal A. Swairjo, Antoni Luque

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Mathematical modeling links Wnt signaling to emergent patterns of metabolism in colon cancer by Mary Lee, George T Chen, Eric Puttock, Kehui Wang, Robert A Edwards, Marian L Waterman, John Lowengrub

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