Interpretable and context-free deconvolution of multi-scale whole transcriptomic data with UniCell deconvolve by Daniel Charytonowicz, Rachel Brody, Robert Sebra

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Using single-cell multiple omics approaches to resolve tumor heterogeneity by Michael A. Ortega, Olivier Poirion, Xun Zhu, Sijia Huang, Thomas K. Wolfgruber, Robert Sebra, Lana X. Garmire

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A Novel Framework for Characterizing Genomic Haplotype Diversity in the Human Immunoglobulin Heavy Chain Locus by Oscar L. Rodriguez, William S. Gibson, Tom Parks, Matthew Emery, James Powell, Maya Strahl, Gintaras Deikus, Kathryn Auckland, Evan E. Eichler, Evan E. Eichler, Wayne A. Marasco, Robert Sebra, Robert Sebra, Andrew J. Sharp, Melissa L. Smith, Melissa L. Smith, Melissa L. Smith, Ali Bashir, Corey T. Watson

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Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment by Molly Estill, Efrain Ribeiro, Nancy J. Francoeur, Melissa L. Smith, Robert Sebra, Szu-Ying Yeh, Ashley M. Cunningham, Eric J. Nestler, Li Shen

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Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection by Chang Wang, Christian V. Forst, Tsui-wen Chou, Adam Geber, Minghui Wang, Wissam Hamou, Melissa Smith, Robert Sebra, Bin Zhang, Bin Zhou, Elodie Ghedin

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Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection by Matthew B. Rogers, Timothy Song, Robert Sebra, Benjamin D. Greenbaum, Marie-Eve Hamelin, Adam Fitch, Alan Twaddle, Lijia Cui, Edward C. Holmes, Guy Boivin, Elodie Ghedin

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LINE-1 promotes tumorigenicity and exacerbates tumor progression via stimulating metabolism reprogramming in non-small cell lung cancer by Zeguo Sun, Rui Zhang, Xiao Zhang, Yifei Sun, Pengpeng Liu, Nancy Francoeur, Lei Han, Wan Yee Lam, Zhengzi Yi, Robert Sebra, Martin Walsh, Jinpu Yu, Weijia Zhang

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Limited Mitochondrial Activity Coupled With Strong Expression of CD34, CD90 and EPCR Determines the Functional Fitness of ex vivo Expanded Human Hematopoietic Stem Cells by Luena Papa, Mansour Djedaini, Tiphaine C. Martin, Tiphaine C. Martin, Mahtab Zangui, Kristin G. Beaumont, Robert Sebra, Ramon Parsons, Ramon Parsons, Christoph Schaniel, Christoph Schaniel, Christoph Schaniel, Ronald Hoffman

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An atlas of late prenatal human neurodevelopment resolved by single-nucleus transcriptomics by Susana I. Ramos, Zarmeen M. Mussa, Elisa N. Falk, Balagopal Pai, Bruno Giotti, Kimaada Allette, Peiwen Cai, Fumiko Dekio, Robert Sebra, Kristin G. Beaumont, Alexander M. Tsankov, Nadejda M. Tsankova

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Spinal cord injury regulates circular RNA expression in axons by Mustafa M. Siddiq, Carlos A. Toro, Carlos A. Toro, Nicholas P. Johnson, Jens Hansen, Yuguang Xiong, Wilfredo Mellado, Rosa E. Tolentino, Kaitlin Johnson, Gomathi Jayaraman, Zaara Suhail, Lauren Harlow, Lauren Harlow, Jinye Dai, Jinye Dai, Jinye Dai, Kristin G. Beaumont, Kristin G. Beaumont, Robert Sebra, Robert Sebra, Dianna E. Willis, Dianna E. Willis, Christopher P. Cardozo, Christopher P. Cardozo, Christopher P. Cardozo, Ravi Iyengar

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Single-cell transcriptomic-informed deconvolution of bulk data identifies immune checkpoint blockade resistance in urothelial cancer by Li Wang, Sudeh Izadmehr, John P. Sfakianos, Michelle Tran, Kristin G. Beaumont, Rachel Brody, Carlos Cordon-Cardo, Amir Horowitz, Robert Sebra, William K. Oh, Nina Bhardwaj, Matthew D. Galsky, Jun Zhu

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Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae. by Jing Li, Jing-Wen Li, Zhixing Feng, Juanjuan Wang, Haoran An, Yanni Liu, Yang Wang, Kailing Wang, Xuegong Zhang, Zhun Miao, Wenbo Liang, Robert Sebra, Guilin Wang, Wen-Ching Wang, Jing-Ren Zhang

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The genome of a subterrestrial nematode reveals adaptations to heat by Deborah J. Weinstein, Sarah E. Allen, Maggie C. Y. Lau, Mariana Erasmus, Kathryn C. Asalone, Kathryn Walters-Conte, Gintaras Deikus, Robert Sebra, Gaetan Borgonie, Esta van Heerden, Tullis C. Onstott, John R. Bracht

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Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis by Sayed Mohammad Ebrahim Sahraeian, Marghoob Mohiyuddin, Robert Sebra, Hagen Tilgner, Pegah T. Afshar, Kin Fai Au, Narges Bani Asadi, Mark B. Gerstein, Wing Hung Wong, Michael P. Snyder, Eric Schadt, Hugo Y. K. Lam

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Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR+ Populations with Stem Cell Properties by Jessica Tome-Garcia, Rut Tejero, German Nudelman, Raymund L. Yong, Robert Sebra, Huaien Wang, Mary Fowkes, Margret Magid, Martin Walsh, Violeta Silva-Vargas, Elena Zaslavsky, Roland H. Friedel, Fiona Doetsch, Nadejda M. Tsankova

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ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms by Gloria M. Sheynkman, Katharine S. Tuttle, Florent Laval, Elizabeth Tseng, Jason G. Underwood, Liang Yu, Da Dong, Melissa L. Smith, Robert Sebra, Luc Willems, Tong Hao, Michael A. Calderwood, David E. Hill, Marc Vidal

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Genetic variants associated with inherited cardiovascular disorders among 13,131 asymptomatic older adults of European descent by Paul Lacaze, Robert Sebra, Moeen Riaz, Jodie Ingles, Jane Tiller, Bryony A. Thompson, Paul A. James, Diane Fatkin, Christopher Semsarian, Christopher M. Reid, Andrew M. Tonkin, Ingrid Winship, Eric Schadt, John J. McNeil

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Permethrin exposure primes neuroinflammatory stress response to drive depression-like behavior through microglial activation in a mouse model of Gulf War Illness by Sean X. Naughton, Eun-Jeong Yang, Umar Iqbal, Kyle Trageser, Daniel Charytonowicz, Sibilla Masieri, Molly Estill, Henry Wu, Urdhva Raval, Weiting Lyu, Qing-li Wu, Li Shen, James Simon, Robert Sebra, Giulio Maria Pasinetti

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Protective lipid-lowering variants in healthy older individuals without coronary heart disease by Andrew Tonkin, John J McNeil, Sophia Zoungas, Galina Polekhina, Chris Reid, Eric Schadt, Jing Pang, Paul Lacaze, Stephen Nicholls, Jane Tiller, Robert Sebra, Moeen Riaz, Amanda J Hooper, Anne M Murray, Gerald Watts

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Sex-specific role of high-fat diet and stress on behavior, energy metabolism, and the ventromedial hypothalamus by Sanutha Shetty, Samuel J. Duesman, Sanil Patel, Pacific Huynh, Pamela Toh, Sanjana Shroff, Anika Das, Disha Chowhan, Benjamin Keller, Johana Alvarez, Rachel Fisher-Foye, Robert Sebra, Kristin Beaumont, Cameron S. McAlpine, Prashant Rajbhandari, Abha K. Rajbhandari

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