Adding a little reality to building ontologies for biology. by Phillip Lord, Robert Stevens

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MIRO: guidelines for minimum information for the reporting of an ontology by Nicolas Matentzoglu, James Malone, Chris Mungall, Robert Stevens

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Ten Simple Rules for Selecting a Bio-ontology. by James Malone, Robert Stevens, Simon Jupp, Tom Hancocks, Helen Parkinson, Cath Brooksbank

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A Survey of Bioinformatics Database and Software Usage through Mining the Literature. by Geraint Duck, Goran Nenadic, Michele Filannino, Andy Brass, David L Robertson, Robert Stevens

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Critical evaluation of stents in coronary angioplasty: a systematic review by Joseph Robert Stevens, Ava Zamani, James Ian Atkins Osborne, Reza Zamani, Mohammad Akrami

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Bias in the reporting of sex and age in biomedical research on mouse models by Oscar Flórez-Vargas, Andy Brass, George Karystianis, Michael Bramhall, Robert Stevens, Sheena Cruickshank, Goran Nenadic

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BUTIMBA: Intensifying the Hunt for Child TB in Swaziland through Household Contact Tracing. by Anna Maria Mandalakas, Katherine Ngo, Pilar Alonso Ustero, Rachel Golin, Florence Anabwani, Bulisile Mzileni, Welile Sikhondze, Robert Stevens

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Providing TB and HIV outreach services to internally displaced populations in Northeast Nigeria: Results of a controlled intervention study. by Suraj A Abdullahi, Marina Smelyanskaya, Stephen John, Haruna I Adamu, Emperor Ubochioma, Ishaya Kennedy, Fatima A Abubakar, Haruna A Ago, Robert Stevens, Jacob Creswell

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Extending 'Contact Tracing' into the Community within a 50-Metre Radius of an Index Tuberculosis Patient Using Xpert MTB/RIF in Urban, Pakistan: Did It Increase Case Detection? by Razia Fatima, Ejaz Qadeer, Aashifa Yaqoob, Mahboob Ul Haq, Suman S Majumdar, Hemant D Shewade, Robert Stevens, Jacob Creswell, Nasir Mahmood, Ajay M V Kumar

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Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature by Mercedes Arguello Casteleiro, George Demetriou, Warren Read, Maria Jesus Fernandez Prieto, Nava Maroto, Diego Maseda Fernandez, Goran Nenadic, Julie Klein, John Keane, Robert Stevens

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Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles. by Justyna Siwy, Carlamaria Zoja, Julie Klein, Ariela Benigni, Wiliam Mullen, Bernd Mayer, Harald Mischak, Joachim Jankowski, Robert Stevens, Antonia Vlahou, Sophia Kossida, Paul Perco, Ferdinand H Bahlmann

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Effects of HIV infection on the metabolic and hormonal status of children with severe acute malnutrition. by Aaloke Mody, Sarah Bartz, Christoph P Hornik, Tonny Kiyimba, James Bain, Michael Muehlbauer, Elizabeth Kiboneka, Robert Stevens, John V St Peter, Christopher B Newgard, John Bartlett, Michael Freemark

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The TB REACH Initiative: Supporting TB Elimination Efforts in the Asia-Pacific by Jacob Creswell, Amera Khan, Mirjam I Bakker, Miranda Brouwer, Vishnu Vardhan Kamineni, Christina Mergenthaler, Marina Smelyanskaya, Zhi Zhen Qin, Oriol Ramis, Robert Stevens, K Srikanth Reddy, Lucie Blok

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Identifying the challenges of code/theory translation: report from the Code/Theory 2017 workshop by Caroline Jay, Robert Haines, Markel Vigo, Nicolas Matentzoglu, Robert Stevens, Jonathan Boyle, Alan Davies, Chiara Del Vescovo, Nicolas Gruel, Anja Le Blanc, David Mawdsley, Dale Mellor, Eleni Mikroyannidi, Richard Rollins, Andrew Rowley, Julio Vega

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Hearing loss in stranded odontocete dolphins and whales. by David Mann, Mandy Hill-Cook, Charles Manire, Danielle Greenhow, Eric Montie, Jessica Powell, Randall Wells, Gordon Bauer, Petra Cunningham-Smith, Robert Lingenfelser, Robert DiGiovanni, Abigale Stone, Micah Brodsky, Robert Stevens, George Kieffer, Paul Hoetjes

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Social Enterprise Model (SEM) for private sector tuberculosis screening and care in Bangladesh. by Sayera Banu, Farhana Haque, Shahriar Ahmed, Sonia Sultana, Md Mahfuzur Rahman, Razia Khatun, Kishor Kumar Paul, Senjuti Kabir, S M Mazidur Rahman, Rupali Sisir Banu, Md Shamiul Islam, Allen G Ross, John D Clemens, Robert Stevens, Jacob Creswell

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Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes by Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, Maria Jesus Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, Peter-John M. Noble, Phil H. Jones, Jo Dukes-McEwan, Alan D. Radford, John Keane, Goran Nenadic

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Metabolomic Quantitative Trait Loci (mQTL) Mapping Implicates the Ubiquitin Proteasome System in Cardiovascular Disease Pathogenesis. by William E Kraus, Deborah M Muoio, Robert Stevens, Damian Craig, James R Bain, Elizabeth Grass, Carol Haynes, Lydia Kwee, Xuejun Qin, Dorothy H Slentz, Deidre Krupp, Michael Muehlbauer, Elizabeth R Hauser, Simon G Gregory, Christopher B Newgard, Svati H Shah

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NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding by Kanix Wang, Robert Stevens, Halima Alachram, Yu Li, Larisa Soldatova, Ross King, Sophia Ananiadou, Annika M. Schoene, Maolin Li, Fenia Christopoulou, José Luis Ambite, Joel Matthew, Sahil Garg, Ulf Hermjakob, Daniel Marcu, Emily Sheng, Tim Beißbarth, Edgar Wingender, Aram Galstyan, Xin Gao, Brendan Chambers, Weidi Pan, Bohdan B. Khomtchouk, James A. Evans, Andrey Rzhetsky

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Neurocognitive correlates of probable posttraumatic stress disorder following traumatic brain injury by Dominique L.G. Van Praag, Kristien Wouters, Filip Van Den Eede, Lindsay Wilson, Andrew I.R. Maas, Cecilia Åkerlund, Krisztina Amrein, Nada Andelic, Lasse Andreassen, Audny Anke, Anna Antoni, Gérard Audibert, Philippe Azouvi, Maria Luisa Azzolini, Ronald Bartels, Pál Barzó, Romuald Beauvais, Ronny Beer, Bo-Michael Bellander, Antonio Belli, Habib Benali, Maurizio Berardino, Luigi Beretta, Morten Blaabjerg, Peter Bragge, Alexandra Brazinova, Vibeke Brinck, Joanne Brooker, Camilla Brorsson, Andras Buki, Monika Bullinger, Manuel Cabeleira, Alessio Caccioppola, Emiliana Calappi, Maria Rosa Calvi, Peter Cameron, Guillermo Carbayo Lozano, Marco Carbonara, Simona Cavallo, Giorgio Chevallard, Arturo Chieregato, Giuseppe Citerio, Iris Ceyisakar, Hans Clusmann, Mark Coburn, Jonathan Coles, Jamie D. Cooper, Marta Correia, Amra Čović, Nicola Curry, Endre Czeiter, Marek Czosnyka, Claire Dahyot-Fizelier, Paul Dark, Helen Dawes, Véronique De Keyser, Vincent Degos, Francesco Della Corte, Hugo den Boogert, Bart Depreitere, Đula Đilvesi, Abhishek Dixit, Emma Donoghue, Jens Dreier, Guy-Loup Dulière, Ari Ercole, Patrick Esser, Erzsébet Ezer, Martin Fabricius, Valery L. Feigin, Kelly Foks, Shirin Frisvold, Alex Furmanov, Pablo Gagliardo, Damien Galanaud, Dashiell Gantner, Guoyi Gao, Pradeep George, Alexandre Ghuysen, Lelde Giga, Ben Glocker, Jagoš Golubovic, Pedro A. Gomez, Johannes Gratz, Benjamin Gravesteijn, Francesca Grossi, Russell L. Gruen, Deepak Gupta, Juanita A. Haagsma, Iain Haitsma, Raimund Helbok, Eirik Helseth, Lindsay Horton, Jilske Huijben, Peter J. Hutchinson, Bram Jacobs, Stefan Jankowski, Mike Jarrett, Ji-yao Jiang, Faye Johnson, Kelly Jones, Mladen Karan, Angelos G. Kolias, Erwin Kompanje, Daniel Kondziella, Evgenios Koraropoulos, Lars-Owe Koskinen, Noémi Kovács, Ana Kowark, Alfonso Lagares, Linda Lanyon, Steven Laureys, Fiona Lecky, Didier Ledoux, Rolf Lefering, Valerie Legrand, Aurelie Lejeune, Leon Levi, Roger Lightfoot, Hester Lingsma, Andrew I.R. Maas, Ana M. Castaño-León, Marc Maegele, Marek Majdan, Alex Manara, Geoffrey Manley, Costanza Martino, Hugues Maréchal, Julia Mattern, Catherine McMahon, Béla Melegh, David Menon, Tomas Menovsky, Ana Mikolic, Benoit Misset, Visakh Muraleedharan, Lynnette Murray, Ancuta Negru, David Nelson, Virginia Newcombe, Daan Nieboer, József Nyirádi, Otesile Olubukola, Matej Oresic, Fabrizio Ortolano, Aarno Palotie, Paul M. Parizel, Jean-François Payen, Natascha Perera, Vincent Perlbarg, Paolo Persona, Wilco Peul, Anna Piippo-Karjalainen, Matti Pirinen, Horia Ples, Suzanne Polinder, Inigo Pomposo, Jussi P. Posti, Louis Puybasset, Andreea Radoi, Arminas Ragauskas, Rahul Raj, Malinka Rambadagalla, Jonathan Rhodes, Sylvia Richardson, Sophie Richter, Samuli Ripatti, Saulius Rocka, Cecilie Roe, Olav Roise, Jonathan Rosand, Jeffrey V. Rosenfeld, Christina Rosenlund, Guy Rosenthal, Rolf Rossaint, Sandra Rossi, Daniel Rueckert, Martin Rusnák, Juan Sahuquillo, Oliver Sakowitz, Renan Sanchez-Porras, Janos Sandor, Nadine Schäfer, Silke Schmidt, Herbert Schoechl, Guus Schoonman, Rico Frederik Schou, Elisabeth Schwendenwein, Charlie Sewalt, Toril Skandsen, Peter Smielewski, Abayomi Sorinola, Emmanuel Stamatakis, Simon Stanworth, Robert Stevens, William Stewart, Ewout W. Steyerberg, Nino Stocchetti, Nina Sundström, Anneliese Synnot, Riikka Takala, Viktória Tamás, Tomas Tamosuitis, Mark Steven Taylor, Braden Te Ao, Olli Tenovuo, Alice Theadom, Matt Thomas, Dick Tibboel, Marjolein Timmers, Christos Tolias, Tony Trapani, Cristina Maria Tudora, Andreas Unterberg, Peter Vajkoczy, Shirley Vallance, Egils Valeinis, Zoltán Vámos, Mathieu van der Jagt, Gregory Van der Steen, Joukje van der Naalt, Jeroen T.J.M. van Dijck, Thomas A. van Essen, Wim Van Hecke, Caroline van Heugten, Dominique Van Praag, Thijs Vande Vyvere, Roel P.J. van Wijk, Alessia Vargiolu, Emmanuel Vega, Kimberley Velt, Jan Verheyden, Paul M. Vespa, Anne Vik, Rimantas Vilcinis, Victor Volovici, Nicole von Steinbüchel, Daphne Voormolen, Petar Vulekovic, Kevin K.W. Wang, Eveline Wiegers, Guy Williams, Lindsay Wilson, Stefan Winzeck, Stefan Wolf, Zhihui Yang, Peter Ylén, Alexander Younsi, Frederick A. Zeiler, Veronika Zelinkova, Agate Ziverte, Tommaso Zoerle

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