Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon by Roman Jaksik, David A. Wheeler, Marek Kimmel

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Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution by Monika Klara Kurpas, Roman Jaksik, Pawel Kuś, Marek Kimmel

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Circuits Regulating Superoxide and Nitric Oxide Production and Neutralization in Different Cell Types: Expression of Participating Genes and Changes Induced by Ionizing Radiation by Patryk Bil, Sylwia Ciesielska, Roman Jaksik, Joanna Rzeszowska-Wolny

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Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. <i>Viruses</i> 2022, <i... by Monika Klara Kurpas, Roman Jaksik, Pawel Kuś, Marek Kimmel

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Sources of High Variance between Probe Signals in Affymetrix Short Oligonucleotide Microarrays by Roman Jaksik, Michal Marczyk, Joanna Polanska, Joanna Rzeszowska-Wolny

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Multiomics-Based Feature Extraction and Selection for the Prediction of Lung Cancer Survival by Roman Jaksik, Kamila Szumała, Khanh Ngoc Dinh, Jarosław Śmieja

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Predicting time to relapse in acute myeloid leukemia through stochastic modeling of minimal residual disease based on clonality data by Khanh N. Dinh, Roman Jaksik, Seth J. Corey, Marek Kimmel

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Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood sampl... by Patrycja Daca-Roszak, Roman Jaksik, Julia Paczkowska, Michał Witt, Ewa Ziętkiewicz

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CRISPRi for specific inhibition of miRNA clusters and miRNAs with high sequence homology by Monika Drobna-Śledzińska, Natalia Maćkowska-Maślak, Roman Jaksik, Paulina Dąbek, Michał Witt, Małgorzata Dawidowska

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A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes by Marzena Mura, Roman Jaksik, Anna Lalik, Krzysztof Biernacki, Marek Kimmel, Joanna Rzeszowska-Wolny, Krzysztof Fujarewicz

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In vitro differentiation of ciliated cells in ALI-cultured human airway epithelium – The framework for functional studies on airway differentiation in ciliopathies by Zuzanna Bukowy-Bieryłło, Patrycja Daca-Roszak, Joanna Jurczak, Hanna Przystałowska-Macioła, Roman Jaksik, Michał Witt, Ewa Ziętkiewicz

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hsa-miR-20b-5p and hsa-miR-363-3p Affect Expression of <i>PTEN</i> and <i>BIM</i> Tumor Suppressor Genes and Modulate Survival of T-ALL Cells In Vitro by Monika Drobna, Bronisława Szarzyńska, Roman Jaksik, Łukasz Sędek, Anna Kuchmiy, Tom Taghon, Pieter Van Vlierberghe, Tomasz Szczepański, Michał Witt, Małgorzata Dawidowska

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P340: IN SEARCH FOR GENOMIC AND TRANSCRIPTOMIC PREDICTORS OF RELAPSE IN PEDIATRIC T-ALL by Małgorzata Dawidowska, Roman Jaksik, Monika Drobna-Sledzinska, Natalia Maćkowska-Maślak, Maria Kosmalska, Łukasz Sędek, Monika Lejman, Agata Pastorczak, Tomasz Szczepański, Michał Witt

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Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells by Natalia Vydra, Patryk Janus, Paweł Kus, Tomasz Stokowy, Katarzyna Mrowiec, Agnieszka Toma-Jonik, Aleksandra Krzywon, Alexander Jorge Cortez, Bartosz Wojtas, Bartłomiej Gielniewski, Roman Jaksik, Marek Kimmel, Wieslawa Widlak

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Comprehensive Investigation of miRNome Identifies Novel Candidate miRNA-mRNA Interactions Implicated in T-Cell Acute Lymphoblastic Leukemia by Małgorzata Dawidowska, Roman Jaksik, Monika Drobna, Bronisława Szarzyńska-Zawadzka, Maria Kosmalska, Łukasz Sędek, Ludomiła Machowska, Anna Lalik, Monika Lejman, Marek Ussowicz, Krzysztof Kałwak, Jerzy R. Kowalczyk, Tomasz Szczepański, Michał Witt

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Small RNA-Seq Reveals Similar miRNA Transcriptome in Children and Young Adults with T-ALL and Indicates miR-143-3p as Novel Candidate Tumor Suppressor in This Leukemia by Małgorzata Dawidowska, Natalia Maćkowska-Maślak, Monika Drobna-Śledzińska, Maria Kosmalska, Roman Jaksik, Donata Szymczak, Małgorzata Jarmuż-Szymczak, Alicja Sadowska-Klasa, Marzena Wojtaszewska, Łukasz Sędek, Tomasz Wróbel, Jan Maciej Zaucha, Tomasz Szczepański, Krzysztof Lewandowski, Sebastian Giebel, Michał Witt

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Hematopoietic stem and progenitor cells confer cross-protective trained immunity in mouse models by Bailee N. Kain, Brandon T. Tran, Pamela N. Luna, Ruoqiong Cao, Duy T. Le, Marcus A. Florez, Laure Maneix, Jack D. Toups, Daniel E. Morales-Mantilla, Scott Koh, Hyojeong Han, Roman Jaksik, Yun Huang, Andre Catic, Chad A. Shaw, Katherine Y. King

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The origin of bladder cancer from mucosal field effects by Jolanta Bondaruk, Roman Jaksik, Ziqiao Wang, David Cogdell, Sangkyou Lee, Yujie Chen, Khanh Ngoc Dinh, Tadeusz Majewski, Li Zhang, Shaolong Cao, Feng Tian, Hui Yao, Paweł Kuś, Huiqin Chen, John N. Weinstein, Neema Navai, Colin Dinney, Jianjun Gao, Dan Theodorescu, Christopher Logothetis, Charles C. Guo, Wenyi Wang, David McConkey, Peng Wei, Marek Kimmel, Bogdan Czerniak

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The origin of bladder cancer from mucosal field effects by Jolanta Bondaruk, Roman Jaksik, Ziqiao Wang, David Cogdell, Sangkyou Lee, Yujie Chen, Khanh Ngoc Dinh, Tadeusz Majewski, Li Zhang, Shaolong Cao, Feng Tian, Hui Yao, Paweł Kuś, Huiqin Chen, John N. Weinstein, Neema Navai, Colin Dinney, Jianjun Gao, Dan Theodorescu, Christopher Logothetis, Charles C. Guo, Wenyi Wang, David McConkey, Peng Wei, Marek Kimmel, Bogdan Czerniak

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