PanDelos: a dictionary-based method for pan-genome content discovery by Vincenzo Bonnici, Rosalba Giugno, Vincenzo Manca

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GRAPES-DD: exploiting decision diagrams for index-driven search in biological graph databases by Nicola Licheri, Vincenzo Bonnici, Marco Beccuti, Rosalba Giugno

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GASOLINE: a Greedy And Stochastic algorithm for optimal Local multiple alignment of Interaction NEtworks. by Giovanni Micale, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro

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GASOLINE: a Cytoscape app for multiple local alignment of PPI networks [v2; ref status: indexed, http://f1000r.es/4f7] by Giovanni Micale, Andrea Continella, Alfredo Ferro, Rosalba Giugno, Alfredo Pulvirenti

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INBIA: a boosting methodology for proteomic network inference by Davide S. Sardina, Giovanni Micale, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno

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Current Knowledge and Computational Techniques for Grapevine Meta-Omics Analysis by Salvatore Alaimo, Gioacchino P. Marceca, Rosalba Giugno, Alfredo Ferro, Alfredo Pulvirenti

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GRAPES: a software for parallel searching on biological graphs targeting multi-core architectures. by Rosalba Giugno, Vincenzo Bonnici, Nicola Bombieri, Alfredo Pulvirenti, Alfredo Ferro, Dennis Shasha

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miRandola: extracellular circulating microRNAs database. by Francesco Russo, Sebastiano Di Bella, Giovanni Nigita, Valentina Macca, Alessandro Laganà, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro

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Arena-Idb: a platform to build human non-coding RNA interaction networks by Vincenzo Bonnici, Giorgio De Caro, Giorgio Constantino, Sabino Liuni, Domenica D’Elia, Nicola Bombieri, Flavio Licciulli, Rosalba Giugno

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Exon–Intron Differential Analysis Reveals the Role of Competing Endogenous RNAs in Post-Transcriptional Regulation of Translation by Nicolas Munz, Luciano Cascione, Luca Parmigiani, Chiara Tarantelli, Andrea Rinaldi, Natasa Cmiljanovic, Vladimir Cmiljanovic, Rosalba Giugno, Francesco Bertoni, Sara Napoli

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Correction to: cuRnet: an R package for graph traversing on GPU by Vincenzo Bonnici, Federico Busato, Stefano Aldegheri, Murodzhon Akhmedov, Luciano Cascione, Alberto Arribas Carmena, Francesco Bertoni, Nicola Bombieri, Ivo Kwee, Rosalba Giugno

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Ten quick tips for biomarker discovery and validation analyses using machine learning. by Ramon Diaz-Uriarte, Elisa Gómez de Lope, Rosalba Giugno, Holger Fröhlich, Petr V Nazarov, Isabel A Nepomuceno-Chamorro, Armin Rauschenberger, Enrico Glaab

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netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks [version 2; peer review: 2 approved] by Shraddha Pai, Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader

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Editorial: 10 years of Frontiers in genetics: past discoveries, current challenges and future perspectives by William C. Cho, Jordi Pérez-Tur, Rosalba Giugno, Mehdi Pirooznia, Kathleen Boris-Lawrie, Dov Greenbaum, Dov Greenbaum, Mojgan Rastegar, Rui Henrique, Rui Henrique, Peng Xu, Joao Batista Teixeira da Rocha, Blanka Rogina

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Intracerebral overexpression of miR-669c is protective in mouse ischemic stroke model by targeting MyD88 and inducing alternative microglial/macrophage activation by Natalia Kolosowska, Maria Gotkiewicz, Hiramani Dhungana, Luca Giudice, Rosalba Giugno, Daphne Box, Mikko T. Huuskonen, Paula Korhonen, Flavia Scoyni, Katja M. Kanninen, Seppo Ylä-Herttuala, Tiia A. Turunen, Mikko P. Turunen, Jari Koistinaho, Tarja Malm

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Biometal Dyshomeostasis in Olfactory Mucosa of Alzheimer’s Disease Patients by Riikka Lampinen, Veronika Górová, Simone Avesani, Jeffrey R. Liddell, Elina Penttilä, Táňa Závodná, Zdeněk Krejčík, Juha-Matti Lehtola, Toni Saari, Juho Kalapudas, Sanna Hannonen, Heikki Löppönen, Jan Topinka, Anne M. Koivisto, Anthony R. White, Rosalba Giugno, Katja M. Kanninen

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B-cell receptor signaling activity identifies patients with mantle cell lymphoma at higher risk of progression by Simona Gambino, Francesca Maria Quaglia, Marilisa Galasso, Chiara Cavallini, Roberto Chignola, Ornella Lovato, Luca Giacobazzi, Simone Caligola, Annalisa Adamo, Santosh Putta, Antonino Aparo, Isacco Ferrarini, Stefano Ugel, Rosalba Giugno, Massimo Donadelli, Ilaria Dando, Mauro Krampera, Carlo Visco, Maria Teresa Scupoli

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Extracellular Vesicles Mediate Mesenchymal Stromal Cell-Dependent Regulation of B Cell PI3K-AKT Signaling Pathway and Actin Cytoskeleton by Annalisa Adamo, Jessica Brandi, Simone Caligola, Pietro Delfino, Riccardo Bazzoni, Roberta Carusone, Daniela Cecconi, Rosalba Giugno, Marcello Manfredi, Marcello Manfredi, Elisa Robotti, Emilio Marengo, Emilio Marengo, Giulio Bassi, Paul Takam Kamga, Giada Dal Collo, Alessandro Gatti, Angela Mercuri, Maddalena Arigoni, Martina Olivero, Raffaele A. Calogero, Mauro Krampera

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Microglial amyloid beta clearance is driven by PIEZO1 channels by Henna Jäntti, Valeriia Sitnikova, Yevheniia Ishchenko, Anastasia Shakirzyanova, Luca Giudice, Irene F. Ugidos, Mireia Gómez-Budia, Nea Korvenlaita, Sohvi Ohtonen, Irina Belaya, Feroze Fazaludeen, Nikita Mikhailov, Maria Gotkiewicz, Kirsi Ketola, Šárka Lehtonen, Jari Koistinaho, Katja M. Kanninen, Damian Hernández, Alice Pébay, Rosalba Giugno, Paula Korhonen, Rashid Giniatullin, Tarja Malm

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Immunosuppression by monocytic myeloid-derived suppressor cells in patients with pancreatic ductal carcinoma is orchestrated by STAT3 by Rosalinda Trovato, Alessandra Fiore, Sara Sartori, Stefania Canè, Rosalba Giugno, Luciano Cascione, Salvatore Paiella, Roberto Salvia, Francesco De Sanctis, Ornella Poffe, Cristina Anselmi, Francesca Hofer, Silvia Sartoris, Geny Piro, Carmine Carbone, Vincenzo Corbo, Rita Lawlor, Samantha Solito, Laura Pinton, Susanna Mandruzzato, Claudio Bassi, Aldo Scarpa, Vincenzo Bronte, Stefano Ugel

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