CAGER: classification analysis of gene expression regulation using multiple information sources by Zhang Weixiong, Ruan Jianhua

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A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks by Gao Zhen, Zhao Ruizhe, Ruan Jianhua

Systematic identification of functional modules and cis-regulatory elements in <it>Arabidopsis thaliana</it> by Ruan Jianhua, Perez Joseph, Hernandez Brian, Lei Chengwei, Sunter Garry, Sponsel Valerie M