Broad phylogenomic sampling and the sister lineage of land plants. by Ruth E Timme, Tsvetan R Bachvaroff, Charles F Delwiche

Get full text

Editorial: Integration of NGS in clinical and public health microbiology workflows: applications, compliance, quality considerations by Shangxin Yang, Varvara K. Kozyreva, Ruth E. Timme, Peera Hemarajata

Get full text

Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples by Tunc Kayikcioglu, Jasmine Amirzadegan, Hugh Rand, Bereket Tesfaldet, Ruth E. Timme, James B. Pettengill

Get full text

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens by Ruth E. Timme, William J. Wolfgang, Maria Balkey, Sai Laxmi Gubbala Venkata, Robyn Randolph, Marc Allard, Errol Strain

Get full text

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica by James B. Pettengill, Ruth E. Timme, Rodolphe Barrangou, Magaly Toro, Marc W. Allard, Errol Strain, Steven M. Musser, Eric W. Brown

Get full text

An analysis of Echinacea chloroplast genomes: Implications for future botanical identification by Ning Zhang, David L. Erickson, Padmini Ramachandran, Andrea R. Ottesen, Ruth E. Timme, Vicki A. Funk, Yan Luo, Sara M. Handy

Get full text

Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by Whole-Genome... by Julie eHaendiges, Ruth eTimme, Marc William Allard, Robert A Myers, Robert A Myers, Eric Wayne Brown, Narjol eGonzález-Escalona

Get full text

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance by Ruth E. Timme, Hugh Rand, Martin Shumway, Eija K. Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E. Tillman, Stephanie Defibaugh-Chavez, Heather A. Carleton, William A. Klimke, Lee S. Katz

Get full text

Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates. by Sara Lomonaco, Matthew A Crawford, Christine Lascols, Ruth E Timme, Kevin Anderson, David R Hodge, Debra J Fisher, Segaran P Pillai, Stephen A Morse, Erum Khan, Molly A Hughes, Marc W Allard, Shashi K Sharma

Get full text

Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars. by Cary Pirone-Davies, Maria Hoffmann, Richard J Roberts, Tim Muruvanda, Ruth E Timme, Errol Strain, Yan Luo, Justin Payne, Khai Luong, Yi Song, Yu-Chih Tsai, Matthew Boitano, Tyson A Clark, Jonas Korlach, Peter S Evans, Marc W Allard

Get full text

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities by Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh

Get full text