Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota. by Sébastien Raguideau, Sandra Plancade, Nicolas Pons, Marion Leclerc, Béatrice Laroche

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Four functional profiles for fibre and mucin metabolism in the human gut microbiome by Simon Labarthe, Sandra Plancade, Sebastien Raguideau, Florian Plaza Oñate, Emmanuelle Le Chatelier, Marion Leclerc, Beatrice Laroche

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DESMAN: a new tool for de novo extraction of strains from metagenomes by Christopher Quince, Tom O. Delmont, Sébastien Raguideau, Johannes Alneberg, Aaron E. Darling, Gavin Collins, A. Murat Eren

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Population-level impacts of antibiotic usage on the human gut microbiome by Kihyun Lee, Sebastien Raguideau, Kimmo Sirén, Francesco Asnicar, Fabio Cumbo, Falk Hildebrand, Nicola Segata, Chang-Jun Cha, Christopher Quince

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STRONG: metagenomics strain resolution on assembly graphs by Christopher Quince, Sergey Nurk, Sebastien Raguideau, Robert James, Orkun S. Soyer, J. Kimberly Summers, Antoine Limasset, A. Murat Eren, Rayan Chikhi, Aaron E. Darling

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Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere by George Muscatt, Sally Hilton, Sebastien Raguideau, Graham Teakle, Ian D. E. A. Lidbury, Elizabeth M. H. Wellington, Christopher Quince, Andrew Millard, Gary D. Bending, Eleanor Jameson

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Identification of Metabolic Signatures Linked to Anti-Inflammatory Effects of <named-content content-type="genus-species">Faecalibacterium prausnitzii</named-content> by Sylvie Miquel, Marion Leclerc, Rebeca Martin, Florian Chain, Marion Lenoir, Sébastien Raguideau, Sylvie Hudault, Chantal Bridonneau, Trent Northen, Benjamin Bowen, Luis G. Bermúdez-Humarán, Harry Sokol, Muriel Thomas, Philippe Langella

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