FRESCo: finding regions of excess synonymous constraint in diverse viruses by Lin, Michael F., Jungreis, Irwin, Kellis, Manolis, Sabeti, Pardis C, Sealfon, Rachel S., Wolf, Maxim Y.

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Detecting Novel Associations in Large Data Sets by Reshef, David N., Reshef, Yakir, Grossman, Sharon Rachel, Finucane, Hilary Kiyo, McVean, Gilean, Turnbaugh, Peter J., Mitzenmacher, Michael, Sabeti, Pardis C., Lander, Eric Steven

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Multiplexed detection of bacterial nucleic acids using Cas13 in droplet microarrays by Thakku, Sri Gowtham, Ackerman, Cheri M, Myhrvold, Cameron, Bhattacharyya, Roby P, Livny, Jonathan, Ma, Peijun, Gomez, Giselle Isabella, Sabeti, Pardis C, Blainey, Paul C, Hung, Deborah T

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Mining data from 1000 genomes to identify the causal variant in regions under positive selection by Grossman, Sharon Rachel, Karlsson, Elinor K., Tabrizi, Shervin, Andersen, Kristian G., Rinn, John L., Lander, Eric S., Schaffner, Steve, Sabeti, Pardis C., 1000 Genomes Project Consortium, Shlyakhter, Ilya, 1975-

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A general SNP-based molecular barcode for <it>Plasmodium falciparum </it>identification and tracking by Rosen David, Park Daniel J, Neafsey Daniel E, Mahesh Nira, Milner Danny A, Volkman Sarah K, Daniels Rachel, Angelino Elaine, Sabeti Pardis C, Wirth Dyann F, Wiegand Roger C

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High depth, whole-genome sequencing of cholera isolates from Haiti and the Dominican Republic by Gire, Stephen, Ellis, Crystal, Calderwood, Stephen B., Qadri, Firdausi, Hensley, Lisa E., Kellis, Manolis, Ryan, Edward T., LaRocque, Regina C., Harris, Jason B., Sabeti, Pardis C., Sealfon, Rachel Sima

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A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking by Daniels, Rachel F., Volkman, Sarah K., Milner, Danny A., Mahesh, Nira, Neafsey, Daniel E., Park, Daniel J., Rosen, David, Angelino, Elaine, Sabeti, Pardis C., Wirth, Dyann F., Wiegand, Roger C.

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A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking by Daniels, Rachel F., Mahesh, Nira, Rosen, David, Angelino, Elaine, Neafsey, Daniel E., Park, Daniel J., Sabeti, Pardis C., Wiegand, Roger C., Volkman, Sarah K., Milner, Danny A., Wirth, Dyann F.

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Evaluation of the Potential Impact of Ebola Virus Genomic Drift on the Efficacy of Sequence-Based Candidate Therapeutics by Kugelman, Jeffrey R., Sanchez-Lockhart, Mariano, Andersen, Kristian G., Gire, Stephen, Park, Daniel J., Lin, Aaron E., Wohl, Shirlee, Sabeti, Pardis C., Kuhn, Jens H., Palacios, Gustavo F., Sealfon, Rachel Sima

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Programmable Inhibition and Detection of RNA Viruses Using Cas13 by Freije, Catherine A, Myhrvold, Cameron, Boehm, Chloe K, Lin, Aaron E, Welch, Nicole L, Carter, Amber, Metsky, Hayden C, Luo, Cynthia Y, Abudayyeh, Omar O, Gootenberg, Jonathan S, Yozwiak, Nathan L, Zhang, Feng, Sabeti, Pardis C

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Designing sensitive viral diagnostics with machine learning by Metsky, Hayden C, Welch, Nicole L, Pillai, Priya P, Haradhvala, Nicholas J, Rumker, Laurie, Mantena, Sreekar, Zhang, Yibin B, Yang, David K, Ackerman, Cheri M, Weller, Juliane, Blainey, Paul C, Myhrvold, Cameron, Mitzenmacher, Michael, Sabeti, Pardis C

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Correction: Lassa hemorrhagic fever in a late term pregnancy from northern Sierra Leone with a positive maternal outcome: case report by Branco Luis M, Boisen Matt L, Andersen Kristian G, Grove Jessica N, Moses Lina M, Muncy Ivana J, Henderson Lee A, Schieffellin John S, Robinson James E, Bangura James J, Grant Donald S, Raabe Vanessa N, Fonnie balu M, Zaitsev Eleina M, Sabeti Pardis C, Garry Robert F

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Massively multiplexed nucleic acid detection using Cas13 by Ackerman, Cheri M., Myhrvold, Cameron, Thakku, Sri Gowtham, Freije, Catherine A., Metsky, Hayden C., Yang, David K., Ye, Simon H., Boehm, Chloe K., Kosoko-Thoroddsen, Tinna-Sólveig F., Kehe, Jared, Nguyen, Tien G., Carter, Amber, Kulesa, Anthony, Barnes, John R., Dugan, Vivien G., Hung, Deborah T., Blainey, Paul C., Sabeti, Pardis C.

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Identifying Recent Adaptations in Large-Scale Genomic Data by Andersen, Kristian G., Tabrizi, Shervin, Winnicki, Sarah, Yen, Angela, Park, Daniel J., Griesemer, Dustin, Karlsson, Elinor K., Wong, Sunny H., Cabili, Moran N., Adegbola, Richard A., Bamezai, Rameshwar N.K., Hill, Adrian V. S., Vannberg, Fredrik O., Rinn, John L., Schaffner, Stephen F., Sabeti, Pardis C., Grossman, Sharon Rachel, Shlyakhter, Ilya, 1975-, Lander, Eric Steven

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Field-deployable viral diagnostics using CRISPR-Cas13 by Myhrvold, Cameron, Freije, Catherine A., Gootenberg, Jonathan S, Abudayyeh, Omar O., Metsky, Hayden C., Durbin, Ann F, Kellner, Max J., Tan, Amanda L., Paul, Lauren M., Parham, Leda A., Garcia, Kimberly F., Barnes, Kayla G., Chak, Bridget, Mondini, Adriano, Nogueira, Mauricio L., Isern, Sharon, Michael, Scott F., Lorenzana, Ivette, Yozwiak, Nathan L., MacInnis, Bronwyn L., Bosch, Irene, Gehrke, Lee, Zhang, Feng, Sabeti, Pardis C.

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Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2 by Arizti-Sanz, Jon, Freije, Catherine A., Stanton, Alexandra C., Petros, Brittany A., Boehm, Chloe K., Siddiqui, Sameed, Shaw, Bennett M., Adams, Gordon, Kosoko-Thoroddsen, Tinna-Solveig F., Kemball, Molly E., Uwanibe, Jessica N., Ajogbasile, Fehintola V., Eromon, Philomena E., Gross, Robin, Wronka, Loni, Caviness, Katie, Hensley, Lisa E., Bergman, Nicholas H., MacInnis, Bronwyn L., Happi, Christian T., Lemieux, Jacob E., Sabeti, Pardis C., Myhrvold, Cameron

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Discrete SARS-CoV-2 antibody titers track with functional humoral stability by Bartsch, Yannic C., Fischinger, Stephanie, Siddiqui, Sameed M., Chen, Zhilin, Yu, Jingyou, Gebre, Makda, Atyeo, Caroline, Gorman, Matthew J., Zhu, Alex Lee, Kang, Jaewon, Burke, John S., Slein, Matthew, Gluck, Matthew J., Beger, Samuel, Hu, Yiyuan, Rhee, Justin, Petersen, Eric, Mormann, Benjamin, Aubin, Michael de St, Hasdianda, Mohammad A., Jambaulikar, Guruprasad, Boyer, Edward W., Sabeti, Pardis C., Barouch, Dan H., Julg, Boris D., Musk, Elon R., Menon, Anil S., Lauffenburger, Douglas A, Nilles, Eric J., Alter, Galit

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Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics by Kotliar, Dylan, Lin, Aaron E, Logue, James, Hughes, Travis K, Khoury, Nadine M, Raju, Siddharth S, Wadsworth, Marc H, Chen, Han, Kurtz, Jonathan R, Dighero-Kemp, Bonnie, Bjornson, Zach B, Mukherjee, Nilanjan, Sellers, Brian A, Tran, Nancy, Bauer, Matthew R, Adams, Gordon C, Adams, Ricky, Rinn, John L, Melé, Marta, Schaffner, Stephen F, Nolan, Garry P, Barnes, Kayla G, Hensley, Lisa E, McIlwain, David R, Shalek, Alex K, Sabeti, Pardis C, Bennett, Richard S

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Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis by Farhat, Maha R., Shapiro, B. Jesse, Kieser, Karen J., Sultana, Razvan, Jacobson, Karen R., Victor, Thomas C., Warren, Robin M., Streicher, Elizabeth M., Calver, Alistair, Sloutsky, Alex, Kaur, Devinder, Posey, Jamie E., Plikaytis, Bonnie, Oggioni, Marco R., Gardy, Jennifer L., Johnston, James C., Rodrigues, Mabel, Tang, Patrick K. C., Kato-Maeda, Midori, Borowsky, Mark L., Muddukrishna, Bhavana, Kreiswirth, Barry N., Kurepina, Natalia, Galagan, James E., Gagneux, Sebastien, Birren, Bruce W., Rubin, Eric J., Sabeti, Pardis C., Murray, Megan B., Lander, Eric Steven

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Capturing sequence diversity in metagenomes with comprehensive and scalable probe design by Metsky, Hayden C., Siddle, Katherine J., Gladden-Young, Adrianne, Qu, James, Yang, David K., Brehio, Patrick, Goldfarb, Andrew, Piantadosi, Anne, Wohl, Shirley, Carter, Amber, Lin, Aaron E., Barnes, Kayla G., Tully, Damien C., Corleis, Bjӧrn, Hennigan, Scott, Barbosa-Lima, Giselle, Vieira, Yasmine R., Paul, Lauren M., Tan, Amanda L., Garcia, Kimberly F., Parham, Leda A., Odia, Ikponmwosa, Eromon, Philomena, Folarin, Onikepe A., Goba, Augustine, Simon, Simon-Lorière, Etienne, Hensley, Lisa, Balmaseda, Angel, Harris, Eva, Kwon, Douglas, Allen, Todd M., Runstadler, Jonathan A., Smole, Sandra, Bozza, Fernando A., Souza, Thiago M. L., Isern, Sharon, Michael, Scott F., Lorenzana, Ivette, Gehrke, Lee, Bosch, Irene, Ebel, Gregory, Grant, Donald S., Happi, Christian T., Park, Daniel J., Gnirke, Andreas, Sabeti, Pardis C., Matranga, Christian B.

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