Perspectives of pharmacy employees on an inappropriate use of antimicrobials in Kathmandu, Nepal. by Nistha Shrestha, Sulochana Manandhar, Nhukesh Maharjan, Devina Twati, Sabina Dongol, Buddha Basnyat, Stephen Baker, Abhilasha Karkey

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Epidemiology, etiology, and diagnosis of health care acquired pneumonia including ventilator-associated pneumonia in Nepal by Sabina Dongol, Gyan Kayastha, Nhukesh Maharjan, Sarita Pyatha, Rajkumar K. C., Louise Thwaites, Buddha Basnyat, Stephen Baker, Abhilasha Karkey

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Risk factors for the development of neonatal sepsis in a neonatal intensive care unit of a tertiary care hospital of Nepal by Sulochana Manandhar, Puja Amatya, Imran Ansari, Niva Joshi, Nhukesh Maharjan, Sabina Dongol, Buddha Basnyat, Sameer M. Dixit, Stephen Baker, Abhilasha Karkey

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A high prevalence of multi-drug resistant Gram-negative bacilli in a Nepali tertiary care hospital and associated widespread distribution of Extended-Spectrum Beta-Lactamase (ESBL)... by Sulochana Manandhar, Raphael M. Zellweger, Nhukesh Maharjan, Sabina Dongol, Krishna G. Prajapati, Guy Thwaites, Buddha Basnyat, Sameer Mani Dixit, Stephen Baker, Abhilasha Karkey

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Diagnostic metabolite biomarkers of chronic typhoid carriage. by Elin Näsström, Pär Jonsson, Anders Johansson, Sabina Dongol, Abhilasha Karkey, Buddha Basnyat, Nga Tran Vu Thieu, Tan Trinh Van, Guy E Thwaites, Henrik Antti, Stephen Baker

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A retrospective investigation of the population structure and geospatial distribution of Salmonella Paratyphi A in Kathmandu, Nepal. by Elli Mylona, Duy Pham Thanh, Jacqueline A Keane, Sabina Dongol, Buddha Basnyat, Christiane Dolecek, Phat Voong Vinh, Nga Tran Vu Thieu, To Nguyen Thi Nguyen, Abhilasha Karkey, Stephen Baker

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Gallbladder carriage generates genetic variation and genome degradation in Salmonella Typhi. by Pham Thanh Duy, Nga Tran Vu Thieu, To Nguyen Thi Nguyen, Ho Ngoc Dan Thanh, Sabina Dongol, Abhilasha Karkey, Megan Carey, Buddha Basnyat, Gordon Dougan, Maia A Rabaa, Stephen Baker

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Salmonella Typhi and Salmonella Paratyphi A elaborate distinct systemic metabolite signatures during enteric fever by Elin Näsström, Nga Tran Vu Thieu, Sabina Dongol, Abhilasha Karkey, Phat Voong Vinh, Tuyen Ha Thanh, Anders Johansson, Amit Arjyal, Guy Thwaites, Christiane Dolecek, Buddha Basnyat, Stephen Baker, Henrik Antti

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A novel air-dried multiplex high-resolution melt assay for the detection of extended-spectrum β-lactamase and carbapenemase genes by Ana I. Cubas-Atienzar, Christopher T. Williams, Abhilasha Karkey, Sabina Dongol, Manandhar Sulochana, Shrestha Rajendra, Glyn Hobbs, Katie Evans, Patrick Musicha, Nicholas Feasey, Luis E. Cuevas, Emily R. Adams, Thomas Edwards

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A Rapid, Multiplexed, High-Throughput Flow-Through Membrane Immunoassay: A Convenient Alternative to ELISA by Gonzalo J. Domingo, Paul Yager, Christiane Dolecek, Jeremy Farrar, Buddha Basnyat, Stephen G. Baker, Sabina Dongol, Amit Arjyal, Jennifer L. Osborn, Katherine G. McKenzie, Mitra Singhal, Sujatha Ramachandran, Barry Lutz

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A 23-year retrospective investigation of Salmonella Typhi and Salmonella Paratyphi isolated in a tertiary Kathmandu hospital. by Raphaël M Zellweger, Buddha Basnyat, Poojan Shrestha, Krishna G Prajapati, Sabina Dongol, Paban K Sharma, Samir Koirala, Thomas C Darton, Christiane Dolecek, Corinne N Thompson, Guy E Thwaites, Stephen G Baker, Abhilasha Karkey

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Differential epidemiology of Salmonella Typhi and Paratyphi A in Kathmandu, Nepal: a matched case control investigation in a highly endemic enteric fever setting. by Abhilasha Karkey, Corinne N Thompson, Nga Tran Vu Thieu, Sabina Dongol, Tu Le Thi Phuong, Phat Voong Vinh, Amit Arjyal, Laura B Martin, Simona Rondini, Jeremy J Farrar, Christiane Dolecek, Buddha Basnyat, Stephen Baker

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Co-trimoxazole versus azithromycin for the treatment of undifferentiated febrile illness in Nepal: study protocol for a randomized controlled trial by Sunil Pokharel, Buddha Basnyat, Amit Arjyal, Saruna Pathak Mahat, Raj Kumar KC, Abhusani Bhuju, Buddhi Poudyal, Evelyne Kestelyn, Ritu Shrestha, Dung Nguyen Thi Phuong, Rajkumar Thapa, Manan Karki, Sabina Dongol, Abhilasha Karkey, Marcel Wolbers, Stephen Baker, Guy Thwaites

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The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water. by Abhilasha Karkey, Thibaut Jombart, Alan W Walker, Corinne N Thompson, Andres Torres, Sabina Dongol, Nga Tran Vu Thieu, Duy Pham Thanh, Dung Tran Thi Ngoc, Phat Voong Vinh, Andrew C Singer, Julian Parkhill, Guy Thwaites, Buddha Basnyat, Neil Ferguson, Stephen Baker

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Diagnostic host gene signature for distinguishing enteric fever from other febrile diseases by Christoph J Blohmke, Julius Muller, Malick M Gibani, Hazel Dobinson, Sonu Shrestha, Soumya Perinparajah, Celina Jin, Harri Hughes, Luke Blackwell, Sabina Dongol, Abhilasha Karkey, Fernanda Schreiber, Derek Pickard, Buddha Basnyat, Gordon Dougan, Stephen Baker, Andrew J Pollard, Thomas C Darton

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Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission by Stephen Baker, Kathryn E. Holt, Archie C. A. Clements, Abhilasha Karkey, Amit Arjyal, Maciej F. Boni, Sabina Dongol, Naomi Hammond, Samir Koirala, Pham Thanh Duy, Tran Vu Thieu Nga, James I. Campbell, Christiane Dolecek, Buddha Basnyat, Gordon Dougan, Jeremy J. Farrar

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The microbiological and clinical characteristics of invasive salmonella in gallbladders from cholecystectomy patients in kathmandu, Nepal. by Sabina Dongol, Corinne N Thompson, Simon Clare, Tran Vu Thieu Nga, Pham Thanh Duy, Abhilasha Karkey, Amit Arjyal, Samir Koirala, Nely Shrestha Khatri, Pukar Maskey, Sanjay Poudel, Vijay Kumar Jaiswal, Sujan Vaidya, Gordon Dougan, Jeremy J Farrar, Christiane Dolecek, Buddha Basnyat, Stephen Baker

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Direct inference and control of genetic population structure from RNA sequencing data by Muhamad Fachrul, Abhilasha Karkey, Mila Shakya, Louise M. Judd, Taylor Harshegyi, Kar Seng Sim, Susan Tonks, Sabina Dongol, Rajendra Shrestha, Agus Salim, STRATAA study group, Stephen Baker, Andrew J. Pollard, Chiea Chuen Khor, Christiane Dolecek, Buddha Basnyat, Sarah J. Dunstan, Kathryn E. Holt, Michael Inouye

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Gatifloxacin versus ofloxacin for the treatment of uncomplicated enteric fever in Nepal: an open-label, randomized, controlled trial. by Samir Koirala, Buddha Basnyat, Amit Arjyal, Olita Shilpakar, Kabina Shrestha, Rishav Shrestha, Upendra Man Shrestha, Krishna Agrawal, Kanika Deshpande Koirala, Sudeep Dhoj Thapa, Abhilasha Karkey, Sabina Dongol, Abhishek Giri, Mila Shakya, Kamal Raj Pathak, James Campbell, Stephen Baker, Jeremy Farrar, Marcel Wolbers, Christiane Dolecek

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Assessment and Translation of the Antibody-in-Lymphocyte Supernatant (ALS) Assay to Improve the Diagnosis of Enteric Fever in Two Controlled Human Infection Models and an Endemic A... by Thomas C. Darton, Thomas C. Darton, Thomas C. Darton, Claire Jones, Sabina Dongol, Merryn Voysey, Merryn Voysey, Christoph J. Blohmke, Rajendra Shrestha, Abhilasha Karkey, Abhilasha Karkey, Mila Shakya, Amit Arjyal, Claire S. Waddington, Malick Gibani, Michael J. Carter, Michael J. Carter, Buddha Basnyat, Stephen Baker, Andrew J. Pollard

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