Fast prediction of RNA-RNA interaction by Backofen Rolf, Salari Raheleh, Sahinalp S Cenk

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Sparsification of RNA structure prediction including pseudoknots by Backofen Rolf, Will Sebastian, Salari Raheleh, Möhl Mathias, Sahinalp S Cenk

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Sparsification of RNA structure prediction including pseudoknots by Mohl, Mathias, Salari, Raheleh, Will, Sebastian, Backofen, Rolf, Sahinalp, S. Cenk

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Dissect: detection and characterization of novel structural alterations in transcribed sequences by Yorukoglu, Deniz, Hac, Faraz, Swanson, Lucas, Collins, Colin C., Birol, Inanc, Sahinalp, S. Cenk

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Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes by Malikić, Salem, Ford, Michael, Qin, Xiang, Toji, Lorraine, Radovich, Milan, Skaar, Todd C., Pratt, Victoria M., Scherer, Steve, Sahinalp, S. Cenk, Numanagic, Ibrahim, Berger Leighton, Bonnie

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Pathway and network analysis of more than 2500 whole cancer genomes by Reyna, Matthew A., Haan, David, Paczkowska, Marta, Verbeke, Lieven P. C., Vazquez, Miguel, Kahraman, Abdullah, Pulido-Tamayo, Sergio, Barenboim, Jonathan, Wadi, Lina, Dhingra, Priyanka, Shrestha, Raunak, Getz, Gad, Lawrence, Michael S., Pedersen, Jakob Skou, Rubin, Mark A., Wheeler, David A., Brunak, Søren, Izarzugaza, Jose M. G., Khurana, Ekta, Marchal, Kathleen, von Mering, Christian, Sahinalp, S. Cenk, Valencia, Alfonso, Reimand, Jüri, Stuart, Joshua M., Raphael, Benjamin J.

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