Integrative molecular phylogeography in the context of infectious diseases on the human-animal interface. by Gray, R, Salemi, M

An exploratory algorithm to identify intra-host recombinant viral sequences. by Salemi, M, Gray, R, Goodenow, M

Measuring the Temporal Structure in Serially-Sampled Phylogenies. by Gray, R, Pybus, O, Salemi, M

Evolutionary characterization of the West Nile Virus complete genome. by Gray, R, Veras, N, Santos, L, Salemi, M

Spatial accessibility and the spread of HIV-1 subtypes and recombinants. by Tatem, A, Hemelaar, J, Gray, R, Salemi, M

A new evolutionary model for hepatitis C virus chronic infection. by Gray, R, Salemi, M, Klenerman, P, Pybus, O

On counting the frequency distribution of string motifs in molecular sequences by Prosperi, M, Prosperi, L, Gray, R, Salemi, M

High-resolution phylogenetics and phylogeography of human immunodeficiency virus type 1 subtype C epidemic in South America. by Véras, N, Gray, R, Brígido, L, Rodrigues, R, Salemi, M

PhyloTempo: A set of R scripts for assessing and visualizing temporal clustering in genealogies inferred from serially sampled viral sequences by Norström, M, Prosperi, M, Gray, R, Karlsson, A, Salemi, M

HIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues. by Lamers, S, Gray, R, Salemi, M, Huysentruyt, L, McGrath, MS

The mode and tempo of hepatitis C virus evolution within and among hosts by Gray, R, Parker, J, Lemey, P, Salemi, M, Katzourakis, A, Pybus, O

The mode and tempo of hepatitis C virus evolution within and among hosts by Gray, R, Parker, J, Lemey, P, Salemi, M, Katzourakis, A, Pybus, O

Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies by Salemi, M, Burkhardt, B, Gray, R, Ghaffari, G, Sleasman, J, Goodenow, M

Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma. by Salemi, M, Lamers, S, Huysentruyt, L, Galligan, D, Gray, R, Morris, A, McGrath, MS

Testing spatiotemporal hypothesis of bacterial evolution using methicillin-resistant Staphylococcus aureus ST239 genome-wide data within a bayesian framework. by Gray, R, Tatem, A, Johnson, J, Alekseyenko, A, Pybus, O, Suchard, M, Salemi, M

Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-hodgkins Lymphoma by Salemi, M, Lamers, S, Huysentruyt, L, Galligan, D, Gray, R, Morris, A, McGrath, MS

Unexpected maintenance of hepatitis C viral diversity following liver transplantation. by Gray, R, Strickland, S, Veras, N, Goodenow, M, Pybus, O, Lemon, S, Fried, M, Nelson, DR, Salemi, M

HIV-1 Subtype distribution in morocco based on national sentinel surveillance data 2004-2005. by Akrim, M, Lemrabet, S, Elharti, E, Gray, R, Tardy, J, Cook, R, Salemi, M, Andre, P, Azarian, T, Aouad, R

Curcumin Combined with Thalidomide Reduces Expression of STAT3 and Bcl-xL, Leading to Apoptosis in Acute Myeloid Leukemia Cell Lines by Mohammadi Kian M, Salemi M, Bahadoran M, Haghi A, Dashti N, Mohammadi S, Rostami S, Chahardouli B, Babakhani D, Nikbakht M

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High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch by Mild, M, Albert, J, Esbjörnsson, J, Gray, R, Kvist, A, Lemey, P, Goodenow, M, Salemi, M, Fenyö, E, Medstrand, P