Using genomics to understand antimicrobial resistance and transmission in Neisseria gonorrhoeae by Sanchez-Buso, L, Harris, SR

Genetic variation regulates the activation and specificity of restriction-modification systems in Neisseria gonorrhoeae by Sánchez-Busó, L, Golparian, D, Parkhill, J, Unemo, M, Harris, SR

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data by Hicks, AL, Wheeler, N, Sanchez-Buso, L, Rakeman, JL, Harris, SR, Grad, YH

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads by Hunt, M, Mather, AE, Sánchez-Busó, L, Page, AJ, Parkhill, J, Keane, JA, Harris, SR

Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer by Golparian, D, Donà, V, Sánchez-Busó, L, Foerster, S, Harris, S, Endimiani, A, Low, N, Unemo, M

Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila by David, S, Sánchez-Busó, L, Harris, SR, Marttinen, P, Rusniok, C, Buchrieser, C, Harrison, TG, Parkhill, J

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex by Chiner-Oms, A, Sanchez-Buso, L, Corander, J, Gagneux, S, Harris, SR, Young, D, González-Candelas, F, Comas, I

Genomic epidemiology of a national outbreak of post-surgical Mycobacterium abscessus wound infections in Brazil by Everall, I, Nogueira, CL, Bryant, JM, Sánchez-Busó, L, Chimara, E, Duarte, RDS, Ramos, JP, Lima, KVB, Lopes, ML, Palaci, M, Kipnis, A, Monego, F, Floto, RA, Parkhill, J, Leão, SC, Harris, SR

A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch by Argimón, S, Yeats, CA, Goater, RJ, Abudahab, K, Taylor, B, Underwood, A, Sánchez-Busó, L, Wong, VK, Dyson, ZA, Nair, S, Park, SE, Marks, F, Page, AJ, Keane, JA, Baker, S, Holt, KE, Dougan, G, Aanensen, DM

Genome-wide epistasis and co-selection study using mutual information by Pensar, J, Puranen, S, Arnold, B, MacAlasdair, N, Kuronen, J, Tonkin-Hill, G, Pesonen, M, Xu, Y, Sipola, A, Sanchez-Buso, L, Lees, JA, Chewapreecha, C, Bentley, SD, Harris, SR, Parkhill, J, Croucher, NJ, Corander, J

Molecular epidemiology and whole genome sequencing analysis of clinical mycobacterium bovis from Ghana by Otchere, ID, Van Tonder, AJ, Asante-Poku, A, Sánchez-Busó, L, Coscollá, M, Osei-Wusu, S, Asare, P, Aboagye, SY, Ekuban, SA, Yahayah, AI, Forson, A, Baddoo, A, Laryea, C, Parkhill, J, Harris, SR, Gagneux, S, Yeboah-Manu, D

Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey by Harris, SR, Cole, MJ, Spiteri, G, Sánchez-Busó, L, Golparian, D, Jacobsson, S, Goater, R, Abudahab, K, Yeats, CA, Bercot, B, Borrego, MJ, Crowley, B, Stefanelli, P, Tripodo, F, Abad, R, Aanensen, DM, Unemo, M, Euro-Gasp Study Group

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches by Otchere, ID, Coscollá, M, Sánchez-Busó, L, Asante-Poku, A, Brites, D, Loiseau, C, Meehan, C, Osei-Wusu, S, Forson, A, Laryea, C, Yahayah, AI, Baddoo, A, Ansa, GA, Aboagye, SY, Asare, P, Borrell, S, Gehre, F, Beckert, P, Kohl, TA, N'Dira, S, Beisel, C, Antonio, M, Niemann, S, De Jong, BC, Parkhill, J, Harris, SR, Gagneux, S, Yeboah-Manu, D