Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques. Dahkki Satija, R, Hein, J, Lunter, G

Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. Dahkki Satija, R, Pachter, L, Hein, J

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC Dahkki Satija, R, Novák, A, Miklós, I, Lyngsø, R, Hein, J

Stochastic models of sequence evolution including insertion-deletion events. Dahkki Miklós, I, Novák, A, Satija, R, Lyngsø, R, Hein, J

Dynamic profiling of the protein life cycle in response to pathogens Dahkki Jovanovic, M., Mertins, P., Przybylski, D., Chevrier, N., Satija, R., Rodriguez, E. H., Fields, A. P., Schwartz, S., Raychowdhury, R., Mumbach, M. R., Eisenhaure, T., Rabani, M., Gennert, D., Lu, D., Delorey, T., Weissman, J. S., Carr, S. A., Hacohen, N., Regev, Aviv, Rooney, Michael Steven

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Viečča ollesdeavstta

The regulatory factor ZFHX3 modifies circadian function in SCN via an AT motif-driven axis Dahkki Parsons, M, Brancaccio, M, Sethi, S, Maywood, E, Satija, R, Edwards, J, Jagannath, A, Couch, Y, Finelli, M, Smyllie, N, Esapa, C, Butler, R, Barnard, A, Chesham, J, Saito, S, Joynson, G, Wells, S, Foster, R, Oliver, P, Simon, M, Mallon, A, Hastings, M, Nolan, P

Landscape of X chromosome inactivation across human tissues Dahkki Tukiainen, T, Villani, A-C, Yen, A, Rivas, MA, Marshall, JL, Satija, R, Aguirre, M, Gauthier, L, Fleharty, M, Kirby, A, Cummings, BB, Castel, SE, Karczewski, KJ, Aguet, F, Byrnes, A, GTEx Consortium, Lappalainen, T, Regev, A, Ardlie, KG, Hacohen, N, MacArthur, DG

Dynamic regulatory network controlling TH 17 cell differentiation Dahkki Yosef, N, Shalek, A, Gaublomme, J, Jin, H, Lee, Y, Awasthi, A, Wu, C, Karwacz, K, Xiao, S, Jorgolli, M, Gennert, D, Satija, R, Shakya, A, Lu, D, Trombetta, J, Pillai, MR, Ratcliffe, P, Coleman, M, Bix, M, Tantin, D, Park, H, Kuchroo, V, Regev, A

Dynamic regulatory network controlling TH17 cell differentiation. Dahkki Yosef, N, Shalek, A, Gaublomme, J, Jin, H, Lee, Y, Awasthi, A, Wu, C, Karwacz, K, Xiao, S, Jorgolli, M, Gennert, D, Satija, R, Shakya, A, Lu, D, Trombetta, J, Pillai, MR, Ratcliffe, P, Coleman, M, Bix, M, Tantin, D, Park, H, Kuchroo, V, Regev, A

Science Forum: The Human Cell Atlas. Dahkki Regev, A, Teichmann, SA, Lander, ES, Amit, I, Benoist, C, Birney, E, Bodenmiller, B, Campbell, PJ, Carninci, P, Clatworthy, M, Clevers, H, Deplancke, B, Dunham, I, Eberwine, J, Eils, R, Enard, W, Farmer, A, Fugger, L, Göttgens, B, Hacohen, N, Haniffa, M, Hemberg, M, Kim, SK, Klenerman, P, Kriegstein, A, Lein, E, Linnarsson, S, Lundberg, E, Lundeberg, J, Majumder, P, Marioni, JC, Merad, M, Mhlanga, M, Nawijn, M, Netea, M, Nolan, G, Pe'er, D, Phillipakis, A, Ponting, CP, Quake, SR, Reik, W, Rozenblatt-Rosen, O, Sanes, JR, Satija, R, Schumacher, TN, Shalek, AK, Shapiro, E, Sharma, P, Shin, JW, Stegle, O, Stratton, MR, Stubbington, MJT, Theis, FJ, Uhlen, M, van Oudenaarden, A, Wagner, A, Watt, FM, Weissman, JS, Wold, BJ, Xavier, RJ, Yosef, N