Sean Eddy

Sean Eddy Sean Roberts Eddy is Professor of Molecular & Cellular Biology and of Applied Mathematics at Harvard University. Previously he was based at the Janelia Research Campus from 2006 to 2015 in Virginia. His research interests are in bioinformatics, computational biology and biological sequence analysis. projects include the use of Hidden Markov models in HMMER, Infernal Pfam and Rfam. Provided by Wikipedia
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  1. 1
    Accelerated Profile HMM Searches.

    Accelerated Profile HMM Searches. by Sean R Eddy

    Published 2011-10-01
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  2. 2
    Open Revolution.

    Open Revolution. by Sean R Eddy

    Published 2009-03-01
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  3. 3
    A model of the statistical power of comparative genome sequence analysis.

    A model of the statistical power of comparative genome sequence analysis. by Sean R Eddy

    Published 2005-01-01
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  4. 4
    "Antedisciplinary" science.

    "Antedisciplinary" science. by Sean R Eddy

    Published 2005-06-01
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  5. 5
    Constructing benchmark test sets for biological sequence analysis using independent set algorithms.

    Constructing benchmark test sets for biological sequence analysis using independent set algorithms. by Samantha Petti, Sean R Eddy

    Published 2022-03-01
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  6. 6
    Correction: Constructing Benchmark Test Sets for Biological Sequence Analysis Using Independent Set Algorithms.

    Correction: Constructing Benchmark Test Sets for Biological Sequence Analysis Using Independent Set Algorithms. by Samantha Petti, Sean R Eddy

    Published 2023-03-01
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  7. 7
    A computational screen for alternative genetic codes in over 250,000 genomes

    A computational screen for alternative genetic codes in over 250,000 genomes by Yekaterina Shulgina, Sean R Eddy

    Published 2021-11-01
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  8. 8
    Probabilistic phylogenetic inference with insertions and deletions.

    Probabilistic phylogenetic inference with insertions and deletions. by Elena Rivas, Sean R Eddy

    Published 2008-09-01
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  9. 9
    Remote homology search with hidden Potts models.

    Remote homology search with hidden Potts models. by Grey W Wilburn, Sean R Eddy

    Published 2020-11-01
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  10. 10
    Query-dependent banding (QDB) for faster RNA similarity searches.

    Query-dependent banding (QDB) for faster RNA similarity searches. by Eric P Nawrocki, Sean R Eddy

    Published 2007-03-01
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  11. 11
    ORFeus: a computational method to detect programmed ribosomal frameshifts and other non-canonical translation events

    ORFeus: a computational method to detect programmed ribosomal frameshifts and other non-canonical translation events by Mary O. Richardson, Sean R. Eddy

    Published 2023-12-01
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  12. 12
    Representation learning of genomic sequence motifs with convolutional neural networks.

    Representation learning of genomic sequence motifs with convolutional neural networks. by Peter K Koo, Sean R Eddy

    Published 2019-12-01
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  13. 13
    Many, but not all, lineage-specific genes can be explained by homology detection failure.

    Many, but not all, lineage-specific genes can be explained by homology detection failure. by Caroline M Weisman, Andrew W Murray, Sean R Eddy

    Published 2020-11-01
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  14. 14
    Free circular introns with an unusual branchpoint in neuronal projections

    Free circular introns with an unusual branchpoint in neuronal projections by Harleen Saini, Alicia A Bicknell, Sean R Eddy, Melissa J Moore

    Published 2019-11-01
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  15. 15
    A genetic, genomic, and computational resource for exploring neural circuit function

    A genetic, genomic, and computational resource for exploring neural circuit function by Fred P Davis, Aljoscha Nern, Serge Picard, Michael B Reiser, Gerald M Rubin, Sean R Eddy, Gilbert L Henry

    Published 2020-01-01
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  16. 16
    Identification and Characterization of a Class of MALAT1-like Genomic Loci

    Identification and Characterization of a Class of MALAT1-like Genomic Loci by Bin Zhang, Yuntao S. Mao, Sarah D. Diermeier, Irina V. Novikova, Eric P. Nawrocki, Tom A. Jones, Zsolt Lazar, Chang-Shung Tung, Weijun Luo, Sean R. Eddy, Karissa Y. Sanbonmatsu, David L. Spector

    Published 2017-05-01
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  17. 17
    Epigenomic landscapes of retinal rods and cones

    Epigenomic landscapes of retinal rods and cones by Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy, Michael A Beer, Joseph R Ecker, Jeremy Nathans

    Published 2016-03-01
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  18. 18
    The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

    The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. by Estienne C Swart, John R Bracht, Vincent Magrini, Patrick Minx, Xiao Chen, Yi Zhou, Jaspreet S Khurana, Aaron D Goldman, Mariusz Nowacki, Klaas Schotanus, Seolkyoung Jung, Robert S Fulton, Amy Ly, Sean McGrath, Kevin Haub, Jessica L Wiggins, Donna Storton, John C Matese, Lance Parsons, Wei-Jen Chang, Michael S Bowen, Nicholas A Stover, Thomas A Jones, Sean R Eddy, Glenn A Herrick, Thomas G Doak, Richard K Wilson, Elaine R Mardis, Laura F Landweber

    Published 2013-01-01
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