The Impacts of Low Diversity Sequence Data on Phylodynamic Inference during an Emerging Epidemic by Anthony Lam, Sebastian Duchene

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Assessing the effect of model specification and prior sensitivity on Bayesian tests of temporal signal. by John H Tay, Arthur Kocher, Sebastian Duchene

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Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families. by Jemma L Geoghegan, Sebastián Duchêne, Edward C Holmes

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The impacts of drift and selection on genomic evolution in insects by K. Jun Tong, Sebastián Duchêne, Nathan Lo, Simon Y.W. Ho

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Infectious disease phylodynamics with occurrence data by Leo A. Featherstone, Francesca Di Giallonardo, Edward C. Holmes, Timothy G. Vaughan, Sebastián Duchêne

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New rules for genomics-informed COVID-19 responses–Lessons learned from the first waves of the Omicron variant in Australia by Ashleigh F. Porter, Norelle Sherry, Patiyan Andersson, Sandra A. Johnson, Sebastian Duchene, Benjamin P. Howden

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New rules for genomics-informed COVID-19 responses-Lessons learned from the first waves of the Omicron variant in Australia. by Ashleigh F Porter, Norelle Sherry, Patiyan Andersson, Sandra A Johnson, Sebastian Duchene, Benjamin P Howden

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Lymphocytic Choriomeningitis Virus Infection, Australia by Leon Caly, Ashleigh F. Porter, Joanna Chua, James P. Collet, Julian D. Druce, Michael G. Catton, Sebastian Duchene

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Plagued by a cryptic clock: insight and issues from the global phylogeny of Yersinia pestis by Katherine Eaton, Leo Featherstone, Sebastian Duchene, Ann G. Carmichael, Nükhet Varlık, G. Brian Golding, Edward C. Holmes, Hendrik N. Poinar

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Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy by Francesca Di Giallonardo, Sebastian Duchene, Ilaria Puglia, Valentina Curini, Francesca Profeta, Cesare Cammà, Maurilia Marcacci, Paolo Calistri, Edward C. Holmes, Alessio Lorusso

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Phylogeography and sex-biased dispersal across riverine manatee populations (Trichechus inunguis and Trichechus manatus) in South America. by Paula Satizábal, Antonio A Mignucci-Giannoni, Sebastián Duchêne, Dalila Caicedo-Herrera, Carlos M Perea-Sicchar, Carmen R García-Dávila, Fernando Trujillo, Susana J Caballero

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Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae. by Kelly L Wyres, Ryan R Wick, Louise M Judd, Roni Froumine, Alex Tokolyi, Claire L Gorrie, Margaret M C Lam, Sebastián Duchêne, Adam Jenney, Kathryn E Holt

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Niche-specific genome degradation and convergent evolution shaping Staphylococcus aureus adaptation during severe infections by Stefano G Giulieri, Romain Guérillot, Sebastian Duchene, Abderrahman Hachani, Diane Daniel, Torsten Seemann, Joshua S Davis, Steven YC Tong, Bernadette C Young, Daniel J Wilson, Timothy P Stinear, Benjamin P Howden

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Molecular epidemiology of the HIV-1 epidemic in Fiji by Atlesh Sudhakar, Donald Wilson, Rachel Devi, Dashika Anshu Balak, Jenni Singh, Kesaia Tuidraki, Lavenia Gaunavinaka, Waisale Turuva, Taina Naivalu, Blair Lawley, John H. Tay, Francesca Di Giallonardo, Sebastian Duchene, Jemma L. Geoghegan

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Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya by Samuel Kariuki, Zoe A Dyson, Cecilia Mbae, Ronald Ngetich, Susan M Kavai, Celestine Wairimu, Stephen Anyona, Naomi Gitau, Robert Sanaya Onsare, Beatrice Ongandi, Sebastian Duchene, Mohamed Ali, John David Clemens, Kathryn E Holt, Gordon Dougan

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Longitudinal genomic analysis of Neisseria gonorrhoeae transmission dynamics in Australia by Mona L. Taouk, George Taiaroa, Sebastian Duchene, Soo Jen Low, Charlie K. Higgs, Darren Y. J. Lee, Shivani Pasricha, Nasra Higgins, Danielle J. Ingle, Benjamin P. Howden, Marcus Y. Chen, Christopher K. Fairley, Eric P. F. Chow, Deborah A. Williamson

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Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of Samoa by Michael J. Sikorski, Tracy H. Hazen, Sachin N. Desai, Susana Nimarota-Brown, Siaosi Tupua, Michelle Sialeipata, Savitra Rambocus, Danielle J. Ingle, Sebastian Duchene, Susan A. Ballard, Mary Valcanis, Sara Zufan, Jianguo Ma, Jason W. Sahl, Mailis Maes, Gordon Dougan, Robert E. Thomsen, Roy M. Robins-Browne, Benjamin P. Howden, Take K. Naseri, Myron M. Levine, David A. Rasko

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The International Virus Bioinformatics Meeting 2022 by Franziska Hufsky, Denis Beslic, Dimitri Boeckaerts, Sebastian Duchene, Enrique González-Tortuero, Andreas J. Gruber, Jiarong Guo, Daan Jansen, John Juma, Kunaphas Kongkitimanon, Antoni Luque, Muriel Ritsch, Gabriel Lencioni Lovate, Luca Nishimura, Célia Pas, Esteban Domingo, Emma Hodcroft, Philippe Lemey, Matthew B. Sullivan, Friedemann Weber, Fernando González-Candelas, Sarah Krautwurst, Alba Pérez-Cataluña, Walter Randazzo, Gloria Sánchez, Manja Marz

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Characterising HIV-1 transmission in Victoria, Australia: a molecular epidemiological studyResearch in context by George Taiaroa, Doris Chibo, Sophie Herman, Mona L. Taouk, Megan Gooey, Jodie D'Costa, Rizmina Sameer, Nicole Richards, Elaine Lee, Lydya Macksabo, Nasra Higgins, David J. Price, Soo Jen Low, Eike Steinig, Genevieve E. Martin, Michael A. Moso, Leon Caly, Jacqueline Prestedge, Christopher K. Fairley, Eric P.F. Chow, Marcus Y. Chen, Sebastian Duchene, Jane S. Hocking, Sharon R. Lewin, Deborah A. Williamson

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