Don't overlook the little guy: An evaluation of the frequency of small plasmids co-conjugating with larger carbapenemase gene containing plasmids by Barry, K, Wailan, A, Sheppard, A, Crook, D, Vegesana, K, Stoesser, N, Parikh, H, Sebra, R, Mathers, A

Complete sequencing of plasmids containing blaOXA-163 and blaOXA-48 in Escherichia coli sequence type 131. by Stoesser, N, Sheppard, AE, Peirano, G, Sebra, R, Lynch, T, Anson, L, Kasarskis, A, Motyl, MR, Crook, DW, Pitout, JD

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193. by Sheppard, A, Stoesser, N, Sebra, R, Kasarskis, A, Deikus, G, Anson, L, Walker, A, Peto, T, Crook, D, Mathers, A

First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131. by Stoesser, N, Sheppard, A, Peirano, G, Sebra, R, Lynch, T, Anson, L, Kasarskis, A, Motyl, M, Crook, D, Pitout, J

Klebsiella quasipneumoniae provides a window into carbapenemase gene transfer, plasmid rearrangements, and patient interactions with the hospital environment by Mathers, AJ, Crook, D, Vaughan, A, Barry, KE, Vegesana, K, Stoesser, N, Parikh, HI, Sebra, R, Kotay, S, Walker, AS, Sheppard, A

Dissemination of multiple carbapenem resistance genes in an in vitro gut model simulating the human colon by Rooney, C, Sheppard, A, Clark, E, Davies, K, Hubbard, A, Sebra, R, Crook, D, Walker, A, Wilcox, M, Chilton, C

Klebsiella quasipneumoniae provides a window into carbapenemase gene transfer, plasmid rearrangements, and patient interactions with the hospital environment by Mathers, AJ, Crook, D, Vaughan, A, Barry, KE, Vegesana, K, Stoesser, N, Parikh, HI, Sebra, R, Kotay, S, Walker, AS, Sheppard, AE

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing. by Mathers, A, Stoesser, N, Sheppard, A, Pankhurst, L, Giess, A, Yeh, A, Didelot, X, Turner, S, Sebra, R, Kasarskis, A, Peto, T, Crook, D, Sifri, C

Chromosomal integration of the Klebsiella pneumoniae carbapenemase gene (blaKPC) in Klebsiella species: Elusive but not rare by Mathers, A, Stoesser, N, Chai, W, Carroll, J, Barry, K, Cheruvanky, A, Sebra, R, Kasarkis, A, Peto, T, Walker, A, Sifri, C, Crook, D, Sheppard, A

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli by Stoesser, N, Sheppard, AE, Peirano, G, Anson, LW, Pankhurst, L, Sebra, R, Phan, HTT, Kasarskis, A, Mathers, AJ, Peto, TEA, Bradford, P, Motyl, MR, Walker, AS, Crook, DW, Pitout, JD

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples by Gweon, H, Shaw, L, Swann, J, De Maio, N, AbuOun, M, Hubbard, A, Bowes, M, Bailey, M, Peto, T, Hoosdally, S, Walker, A, Sebra, R, Crook, D, Anjum, M, Read, D, Stoesser, N

A genomic epidemiological study shows that prevalence of antimicrobial resistance in Enterobacterales is associated with the livestock host, as well as antimicrobial usagee by AbuOun, M, Jones, H, Stubberfield, E, Gilson, D, Shaw, LP, Hubbard, ATM, Chau, KK, Sebra, R, Peto, TEA, Crook, DW, Read, DS, Gweon, HS, Walker, AS, Stoesser, N, Smith, RP, Anjum, MF

Nested Russian doll-like genetic mobility drives rapid dissemination of the carbapenem resistance gene blaKPC by Sheppard, A, Stoesser, N, Wilson, D, Sebra, R, Kasarkis, A, Anson, L, Giess, A, Pankhurst, L, Vaughan, A, Grim, C, Cox, H, Yeh, A, Sifri, C, Walker, A, Peto, T, Crook, D, Mathers, A

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus... by Stoesser, N, Giess, A, Batty, E, Sheppard, A, Walker, A, Wilson, D, Didelot, X, Bashir, A, Sebra, R, Kasarskis, A, Sthapit, B, Shakya, M, Kelly, D, Pollard, A, Peto, T, Crook, D, Donnelly, P, Thorson, S, Amatya, P, Joshi, S

Genomic profiling reveals mutational landscape in parathyroid carcinomas. by Pandya, C, Uzilov, A, Bellizzi, J, Lau, C, Moe, A, Strahl, M, Hamou, W, Newman, L, Fink, M, Antipin, Y, Yu, W, Stevenson, M, Cavaco, B, Teh, B, Thakker, R, Morreau, H, Schadt, E, Sebra, R, Li, S, Arnold, A, Chen, R

Genomic epidemiology of complex, multi-species, plasmid-borne blaKPC carbapenemase in Enterobacterales in the UK, 2009-2014 by Stoesser, N, Phan, HTT, Seale, A, Aiken, Z, Thomas, S, Smith, M, Wyllie, D, George, R, Sebra, R, Mathers, A, Vaughan, A, Peto, TEA, Ellington, MJ, Hopkins, KL, Crook, DW, Orlek, A, Welfare, W, Cawthorne, J, Lenney, C, Dodgson, A, Walker, AS

Genomic network analysis of environmental and livestock F-type plasmid populations by Matlock, W, Chau, KK, AbuOun, M, Stubberfield, E, Barker, L, Kavanagh, J, Pickford, H, Gilson, D, Smith, RP, Gweon, HS, Hoosdally, SJ, Swann, J, Sebra, R, Bailey, MJ, Peto, TEA, Crook, DW, Anjum, MF, Read, DS, Walker, AS, Stoesser, N, Shaw, L

A large, refractory nosocomial outbreak of Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli demonstrates carbapenemase gene outbreaks involving sink sites requi... by Decraene, V, Phan, H, George, R, Wyllie, D, Akinremi, O, Aiken, Z, Cleary, P, Dodgson, A, Pankhurst, L, Crook, D, Lenney, C, Walker, A, Woodford, N, Sebra, R, Fath-Ordoubadi, F, Mathers, A, Seale, A, Guiver, M, McEwan, A, Watts, V, Welfare, W, Stoesser, N, Cawthorne, J, TRACE Investigators’ Group

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae. by Shaw, LP, Chau, KK, Kavanagh, J, AbuOun, M, Stubberfield, E, Gweon, HS, Barker, L, Rodger, G, Bowes, MJ, Hubbard, ATM, Pickford, H, Swann, J, Gilson, D, Smith, RP, Hoosdally, SJ, Sebra, R, Brett, H, Peto, TEA, Bailey, MJ, Crook, DW, Read, DS, Anjum, MF, Walker, AS, Stoesser, N, REHAB consortium