Serafim Batzoglou

Serafim Batzoglou Serafim Batzoglou is Chief Data Officer at Seer Inc. Prior to that he was Chief Data Officer at insitro, VP of computational genomics at [https://www.illumina.com/ Illumina], and professor of computer science at Stanford University between 2001 and 2016. His lab focused on computational genomics with special interest in developing algorithms, machine learning methods, and systems for the analysis of large scale genomic data. He has also been involved with the Human Genome Project and ENCODE. Provided by Wikipedia
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  1. 1
    A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy

    A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy by Victoria Popic, Serafim Batzoglou

    Published 2017-05-01
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  2. 2
    HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data

    HAPDeNovo: a haplotype-based approach for filtering and phasing de novo mutations in linked read sequencing data by Xin Zhou, Serafim Batzoglou, Arend Sidow, Lu Zhang

    Published 2018-06-01
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  3. 3
    An effective filter for IBD detection in large data sets.

    An effective filter for IBD detection in large data sets. by Lin Huang, Sivan Bercovici, Jesse M Rodriguez, Serafim Batzoglou

    Published 2014-01-01
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  4. 4
    Whole-genome sequencing and assembly with high-throughput, short-read technologies.

    Whole-genome sequencing and assembly with high-throughput, short-read technologies. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou

    Published 2007-05-01
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  5. 5
    Vicus: Exploiting local structures to improve network-based analysis of biological data.

    Vicus: Exploiting local structures to improve network-based analysis of biological data. by Bo Wang, Lin Huang, Yuke Zhu, Anshul Kundaje, Serafim Batzoglou, Anna Goldenberg

    Published 2017-10-01
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  6. 6
    Constraint and divergence of global gene expression in the mammalian embryo

    Constraint and divergence of global gene expression in the mammalian embryo by Noah Spies, Cheryl L Smith, Jesse M Rodriguez, Julie C Baker, Serafim Batzoglou, Arend Sidow

    Published 2015-04-01
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  7. 7
    Identifying a high fraction of the human genome to be under selective constraint using GERP++.

    Identifying a high fraction of the human genome to be under selective constraint using GERP++. by Eugene V Davydov, David L Goode, Marina Sirota, Gregory M Cooper, Arend Sidow, Serafim Batzoglou

    Published 2010-12-01
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  8. 8
    Genetic and computational identification of a conserved bacterial metabolic module.

    Genetic and computational identification of a conserved bacterial metabolic module. by Cara C Boutte, Balaji S Srinivasan, Jason A Flannick, Antal F Novak, Andrew T Martens, Serafim Batzoglou, Patrick H Viollier, Sean Crosson

    Published 2008-12-01
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  9. 9
    Nanoparticle enrichment mass-spectrometry proteomics identifies protein-altering variants for precise pQTL mapping

    Nanoparticle enrichment mass-spectrometry proteomics identifies protein-altering variants for precise pQTL mapping by Karsten Suhre, Guhan Ram Venkataraman, Harendra Guturu, Anna Halama, Nisha Stephan, Gaurav Thareja, Hina Sarwath, Khatereh Motamedchaboki, Margaret K. R. Donovan, Asim Siddiqui, Serafim Batzoglou, Frank Schmidt

    Published 2024-02-01
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  10. 10
    Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

    Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale by Soumaya Zlitni, Alex Bishara, Eli L. Moss, Ekaterina Tkachenko, Joyce B. Kang, Rebecca N. Culver, Tessa M. Andermann, Ziming Weng, Christina Wood, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami S. Bhatt

    Published 2020-05-01
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  11. 11
    Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls

    Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls by Margaret K. R. Donovan, Yingxiang Huang, John E. Blume, Jian Wang, Daniel Hornburg, Shadi Ferdosi, Iman Mohtashemi, Sangtae Kim, Marwin Ko, Ryan W. Benz, Theodore L. Platt, Serafim Batzoglou, Luis A. Diaz, Omid C. Farokhzad, Asim Siddiqui

    Published 2023-01-01
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  12. 12
    Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls.

    Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls. by Margaret K R Donovan, Yingxiang Huang, John E Blume, Jian Wang, Daniel Hornburg, Shadi Ferdosi, Iman Mohtashemi, Sangtae Kim, Marwin Ko, Ryan W Benz, Theodore L Platt, Serafim Batzoglou, Luis A Diaz, Omid C Farokhzad, Asim Siddiqui

    Published 2023-01-01
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