Atlas – a data warehouse for integrative bioinformatics by Yuen Macaire MS, Xu Tao, Huang Yong, Shah Sohrab P, Ling John, Ouellette BF Francis

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Pegasys: software for executing and integrating analyses of biological sequences by Lett Drew, Quon Gerald, Druce Jeffrey C, Sawkins Jessica N, He David YM, Shah Sohrab P, Zheng Grace XY, Xu Tao, Ouellette BF Francis

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Cancer phylogenetic tree inference at scale from 1000s of single cell genomes by Salehi, Sohrab, Dorri, Fatemeh, Chern, Kevin, Kabeer, Farhia, Rusk, Nicole, Funnell, Tyler, Williams, Marc J., Lai, Daniel, Andronescu, Mirela, Campbell, Kieran R., McPherson, Andrew, Aparicio, Samuel, Roth, Andrew, Shah, Sohrab P., Bouchard-Côté, Alexandre

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14-3-3 fusion oncogenes in high-grade endometrial stromal sarcoma by Lee, Cheng-Han, Ou, Wen-Bin, Marino-Enriquez, Adrian, Zhu, Meijun, Mayeda, Mark, Wang, Yuexiang, Guo, Xiangqian, Brunner, Alayne L., Amant, Frédéric, French, Christopher A., West, Robert B., McAlpine, Jessica N., Gilks, C. Blake, Prentice, Leah M., Jones, Steven J. M., Marra, Marco A., Shah, Sohrab P., Rijn, Matt van de, Huntsman, David G., Cin, Paola Dal, Debiec-Rychter, Maria, Nucci, Marisa R., Fletcher, Jonathan A., Yaffe, Michael B, McPherson, Andrew

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Clonal fitness inferred from time-series modelling of single-cell cancer genomes by Salehi, Sohrab, Kabeer, Farhia, Ceglia, Nicholas, Andronescu, Mirela, Williams, Marc J., Campbell, Kieran R., Masud, Tehmina, Wang, Beixi, Biele, Justina, Brimhall, Jazmine, Gee, David, Lee, Hakwoo, Ting, Jerome, Zhang, Allen W., Tran, Hoa, O’Flanagan, Ciara, Dorri, Fatemeh, Rusk, Nicole, de Algara, Teresa Ruiz, Lee, So Ra, Cheng, Brian Yu Chieh, Eirew, Peter, Kono, Takako, Pham, Jenifer, Grewal, Diljot, Lai, Daniel, Moore, Richard, Mungall, Andrew J., Marra, Marco A., Hannon, Gregory J., Battistoni, Giorgia, Bressan, Dario, Cannell, Ian Gordon, Casbolt, Hannah, Fatemi, Atefeh, Jauset, Cristina, Kovačević, Tatjana, Mulvey, Claire M., Nugent, Fiona, Ribes, Marta Paez, Pearsall, Isabella, Qosaj, Fatime, Sawicka, Kirsty, Wild, Sophia A., Williams, Elena, Laks, Emma, Li, Yangguang, O’Flanagan, Ciara H., Smith, Austin, Ruiz, Teresa, Lai, Daniel, Roth, Andrew, Balasubramanian, Shankar, Lee, Maximillian, Bodenmiller, Bernd, Burger, Marcel, Kuett, Laura, Tietscher, Sandra, Windhager, Jonas, Boyden, Edward S., Alon, Shahar, Cui, Yi, Emenari, Amauche, Goodwin, Dan, Karagiannis, Emmanouil D., Sinha, Anubhav, Wassie, Asmamaw T., Caldas, Carlos, Bruna, Alejandra, Callari, Maurizio, Greenwood, Wendy, Lerda, Giulia, Eyal-Lubling, Yaniv, Rueda, Oscar M., Shea, Abigail, Harris, Owen, Becker, Robby, Grimaldi, Flaminia, Harris, Suvi, Vogl, Sara Lisa, Weselak, Joanna, Joyce, Johanna A., Watson, Spencer S., Vázquez-Garćıa, Ignacio, Tavaré, Simon, Dinh, Khanh N., Fisher, Eyal, Kunes, Russell, Walton, Nicholas A., Sa’d, Mohammad Al, Chornay, Nick, Dariush, Ali, González-Solares, Eduardo A., González-Fernández, Carlos, Yoldas, Aybüke Küpcü, Millar, Neil, Whitmarsh, Tristan, Zhuang, Xiaowei, Fan, Jean, Lee, Hsuan, Sepúlveda, Leonardo A., Xia, Chenglong, Zheng, Pu, McPherson, Andrew, Bouchard-Côté, Alexandre, Aparicio, Samuel, Shah, Sohrab P.

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