Metagenomic Sequencing of Positive Blood Culture Fluid for Accurate Bacterial and Fungal Species Identification: A Pilot Study by Edwin Kamau, Shangxin Yang

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Endofungal Mycetohabitans rhizoxinica Bacteremia Associated with Rhizopus microsporus Respiratory Tract Infection by Shangxin Yang, Victoria Anikst, Paul C. Adamson

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Extensively Drug-Resistant Shigella flexneri 2a, California, USA, 2022 by J.R. Caldera, Shangxin Yang, Daniel Z. Uslan

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Reinfection or relapse? A case study of whole genome sequencing guided genomic characterization of Mycobacterium abscessus chronic infection in a cystic fibrosis patient by Rachit Chawla, Benjamin von Bredow, Jaime Deville, Shangxin Yang

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Deceiving Phenotypic Susceptibility Results on a Klebsiella pneumoniae Blood Isolate Carrying Plasmid-Mediated AmpC Gene blaDHA-1 by Susan Realegeno, Kevin Ward, Omai B. Garner, Shangxin Yang

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Aeromonas nosocomial cluster: Investigation review of possible modes of transmission by Anjali Bisht, Hannah Gray, JR Caldera, Shangxin Yang, Dan Uslan

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Editorial: Integration of NGS in clinical and public health microbiology workflows: applications, compliance, quality considerations by Shangxin Yang, Varvara K. Kozyreva, Ruth E. Timme, Peera Hemarajata

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Epidemiological and Genomic Analysis of SARS-CoV-2 in 10 Patients From a Mid-Sized City Outside of Hubei, China in the Early Phase of the COVID-19 Outbreak by Jinkun Chen, Evann E. Hilt, Fan Li, Huan Wu, Zhuojing Jiang, Qinchao Zhang, Jiling Wang, Yifang Wang, Ziqin Li, Jialiang Tang, Shangxin Yang, Shangxin Yang

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Case Report: Disseminated Edwardsiella tarda infection in an immunocompromised patient by Lucia An, June L. Chan, Margaret Nguyen, Shangxin Yang, Jaime G. Deville

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Discovery of a novel sub-lineage of multi-drug resistant Shigella flexneri in Southern California by Edwin Kamau, Paul C. Adamson, John Crandall, Rituparna Mukhopadhyay, Shangxin Yang

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Clinical Whole-Genome Sequencing Assay for Rapid <i>Mycobacterium tuberculosis</i> Complex First-Line Drug Susceptibility Testing and Phylogenetic Relatedness Analysis by Bennett Shaw, Benjamin von Bredow, Allison Tsan, Omai Garner, Shangxin Yang

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Clinical and Genomic Characterization of Carbapenem-Resistant <i>Klebsiella pneumoniae</i> with Concurrent Production of NDM and OXA-48-like Carbapenemases in Southern California,... by Stacey Cerón, Zackary Salem-Bango, Deisy A. Contreras, Elizabeth L. Ranson, Shangxin Yang

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Diversity of upper respiratory tract infections and prevalence of Streptococcus pneumoniae colonization among patients with fever and flu-like symptoms by Jialiang Tang, Jinkun Chen, Tingting He, Zhuojing Jiang, Jiale Zhou, Bin Hu, Shangxin Yang

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Community acquired Stenotrophomonas maltophilia discitis: Diagnosis aided by shotgun metagenomic sequencing by Gang Wang, Nannan Xu, Lulu Yang, Feng Zheng, Lintao Sai, Jiale Zhou, Shangxin Yang

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Domestically Acquired NDM-1–Producing Pseudomonas aeruginosa, Southern California, USA, 2023 by Hannah K. Gray, Omer E. Beaird, Ethan A. Smith, Joanna M. Schaenman, Shangxin Yang

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An Unusual Carbapenem Resistant Escherichia coli Carrying Plasmid-mediated AmpC and Mutated ompC in A Patient with Recurrent Urinary Tract Infections by Paige M.K. Larkin, Susan Realegeno, Kevin W. Ward, Omai B. Garner, Shangxin Yang

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Unusual carbapenem resistant but ceftriaxone and cefepime susceptible Klebsiella oxytoca isolated from a blood culture: Case report and whole-genome sequencing investigation by Shangxin Yang, Peera Hemarajata, Laura Shevy, Mario Maciariello, Karissa Culbreath, Karen Bush, Romney Humphries

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Utilization of whole genome sequencing for resolution of discrepant Mycobacterium tuberculosis drug susceptibility results: A case report by Susan Realegeno, Oladunni Adeyiga, Drew J. Winston, Omer E. Beaird, Omai B. Garner, Shangxin Yang

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Clinical and genomic characterization of hypervirulent Klebsiella pneumoniae (hvKp) infections via passive surveillance in Southern California, 2020–2022 by Edwin Kamau, Elizabeth L. Ranson, Allison T. Tsan, Elke S. Bergmann-Leitner, Omai B. Garner, Shangxin Yang

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Fungal Whole-Genome Sequencing for Species Identification: From Test Development to Clinical Utilization by Zackary Salem-Bango, Travis K Price, June L Chan, Sukantha Chandrasekaran, Omai B Garner, Shangxin Yang

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