A systematic literature review: deep learning techniques for synthetic medical image generation and their applications in radiotherapy by Moiz Khan Sherwani, Shyam Gopalakrishnan

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Effects of Social Structure on Effective Population Size Change Estimates by Bárbara Ribeiro Parreira, Shyam Gopalakrishnan, Lounès Chikhi

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HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph. by Joshua Daniel Rubin, Nicola Alexandra Vogel, Shyam Gopalakrishnan, Peter Wad Sackett, Gabriel Renaud

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The genome sequence of the grey wolf, Canis lupus Linnaeus 1758 [version 1; peer review: 2 approved] by Mikkel-Holger S. Sinding, Katrine Raundrup, Shyam Gopalakrishnan, Tom Gilbert, Love Dalén, Jonathan Threlfall

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Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions by Nikolas Hallberg Thuesen, Nikolas Hallberg Thuesen, Michael Schantz Klausen, Shyam Gopalakrishnan, Thomas Trolle, Gabriel Renaud

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Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū by Jonas Niemann, Shyam Gopalakrishnan, Nobuyuki Yamaguchi, Jazmín Ramos-Madrigal, Nathan Wales, M. Thomas P. Gilbert, Mikkel-Holger S. Sinding

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Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats by Alexander F. Gileta, Jianjun Gao, Apurva S. Chitre, Hannah V. Bimschleger, Celine L. St. Pierre, Shyam Gopalakrishnan, Abraham A. Palmer

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Mapping of Craniofacial Traits in Outbred Mice Identifies Major Developmental Genes Involved in Shape Determination. by Luisa F Pallares, Peter Carbonetto, Shyam Gopalakrishnan, Clarissa C Parker, Cheryl L Ackert-Bicknell, Abraham A Palmer, Diethard Tautz

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Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research by Lasse Nyholm, Adam Koziol, Sofia Marcos, Amanda Bolt Botnen, Ostaizka Aizpurua, Shyam Gopalakrishnan, Morten T. Limborg, M.Thomas P. Gilbert, Antton Alberdi

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eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity by Jacob Agerbo Rasmussen, Martin Nielsen, Sarah S. T. Mak, Johanna Döring, Franziska Klincke, Shyam Gopalakrishnan, Robert R. Dunn, Randolf Kauer, Marcus Thomas Pius Gilbert

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Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility by Jennifer Zou, Shyam Gopalakrishnan, Clarissa C Parker, Jerome Nicod, Richard Mott, Na Cai, Arimantas Lionikas, Robert W Davies, Abraham A Palmer, Jonathan Flint

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Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae) by Phen Garrett, Hannes Becher, Galina Gussarova, Galina Gussarova, Galina Gussarova, Claude W. dePamphilis, Rob W. Ness, Shyam Gopalakrishnan, Alex D. Twyford, Alex D. Twyford

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A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss) by Jacob Agerbo Rasmussen, Kasper Rømer Villumsen, Madeleine Ernst, Martin Hansen, Torunn Forberg, Shyam Gopalakrishnan, M. Thomas P. Gilbert, Anders Miki Bojesen, Karsten Kristiansen, Morten Tønsberg Limborg

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Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark by Ashot Margaryan, Christina Lehmkuhl Noer, Stine Raith Richter, Marlene Elise Restrup, Julie Lee Bülow‐Hansen, Frederik Leerhøi, Emilia Marie Rolander Langkjær, Shyam Gopalakrishnan, Christian Carøe, M. Thomas P. Gilbert, Kristine Bohmann

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The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics by Shyam Gopalakrishnan, Jose A. Samaniego Castruita, Mikkel-Holger S. Sinding, Lukas F. K. Kuderna, Jannikke Räikkönen, Bent Petersen, Thomas Sicheritz-Ponten, Greger Larson, Ludovic Orlando, Tomas Marques-Bonet, Anders J. Hansen, Love Dalén, M. Thomas P. Gilbert

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When birds of a feather flock together: Severe genomic erosion and the implications for genetic rescue in an endangered island passerine by Emily L. Cavill, Hernán E. Morales, Xin Sun, Michael V. Westbury, Cock vanOosterhout, Wilna Accouche, Anna Zora, Melissa J. Schulze, Nirmal Shah, Pierre‐André Adam, M. de L. Brooke, Paul Sweet, Shyam Gopalakrishnan, M. Thomas P. Gilbert

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Travel Tales of a Worldwide Weed: Genomic Signatures of Plantago major L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes by Natalie Iwanycki Ahlstrand, Shyam Gopalakrishnan, Shyam Gopalakrishnan, Filipe G. Vieira, Vanessa C. Bieker, Heidi M. Meudt, Stephanie Dunbar-Co, Carl J. Rothfels, Karen A. Martinez-Swatson, Carla Maldonado, Gustavo Hassemer, Alexey Shipunov, M. Deane Bowers, Elliot Gardner, Elliot Gardner, Maonian Xu, Abdolbaset Ghorbani, Makoto Amano, Olwen M. Grace, James S. Pringle, Madonna Bishop, Vincent Manzanilla, Helena Cotrim, Sean Blaney, Dimitri Zubov, Hong-Keun Choi, Yeter Yesil, Bruce Bennett, Sornkanok Vimolmangkang, Hesham R. El-Seedi, Peter O. Staub, Zhu Li, Delgerbat Boldbaatar, Michael Hislop, Laura J. Caddy, A. Muthama Muasya, C. Haris Saslis-Lagoudakis, M. Thomas P. Gilbert, Nyree J. C. Zerega, Nyree J. C. Zerega, Nina Rønsted, Nina Rønsted

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Conservation implications of elucidating the Korean wolf taxonomic ambiguity through whole‐genome sequencing by Germán Hernández‐Alonso, Jazmín Ramos‐Madrigal, Xin Sun, Camilla Hjorth Scharff‐Olsen, Mikkel‐Holger S. Sinding, Nuno F. Martins, Marta Maria Ciucani, Sarah S. T. Mak, Liam Thomas Lanigan, Cecilie G. Clausen, Jong Bhak, Sungwon Jeon, Changjae Kim, Kyung Yeon Eo, Seong‐Ho Cho, Bazartseren Boldgiv, Gankhuyag Gantulga, Zunduibaatar Unudbayasgalan, Pavel A. Kosintsev, Hans K. Stenøien, M. Thomas P. Gilbert, Shyam Gopalakrishnan

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A 5700 year-old human genome and oral microbiome from chewed birch pitch by Theis Z. T. Jensen, Jonas Niemann, Katrine Højholt Iversen, Anna K. Fotakis, Shyam Gopalakrishnan, Åshild J. Vågene, Mikkel Winther Pedersen, Mikkel-Holger S. Sinding, Martin R. Ellegaard, Morten E. Allentoft, Liam T. Lanigan, Alberto J. Taurozzi, Sofie Holtsmark Nielsen, Michael W. Dee, Martin N. Mortensen, Mads C. Christensen, Søren A. Sørensen, Matthew J. Collins, M. Thomas P. Gilbert, Martin Sikora, Simon Rasmussen, Hannes Schroeder

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The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs by Marta Maria Ciucani, Jazmín Ramos-Madrigal, Germán Hernández-Alonso, Alberto Carmagnini, Sabhrina Gita Aninta, Xin Sun, Camilla Hjorth Scharff-Olsen, Liam Thomas Lanigan, Ilaria Fracasso, Cecilie G. Clausen, Jouni Aspi, Ilpo Kojola, Laima Baltrūnaitė, Linas Balčiauskas, Jane Moore, Mikael Åkesson, Urmas Saarma, Maris Hindrikson, Pavel Hulva, Barbora Černá Bolfíková, Carsten Nowak, Raquel Godinho, Steve Smith, Ladislav Paule, Sabina Nowak, Robert W. Mysłajek, Sabrina Lo Brutto, Paolo Ciucci, Luigi Boitani, Cristiano Vernesi, Hans K. Stenøien, Oliver Smith, Laurent Frantz, Lorenzo Rossi, Francesco Maria Angelici, Elisabetta Cilli, Mikkel-Holger S. Sinding, M. Thomas P. Gilbert, Shyam Gopalakrishnan

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