Development and performance assessment of a luminex xMAP® direct hybridization assay for the detection and identification of indoor air fungal contamination. by Xavier Libert, Ann Packeu, Fabrice Bureau, Nancy H Roosens, Sigrid C J De Keersmaecker

Get full text

Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study by Xavier Libert, Ann Packeu, Fabrice Bureau, Nancy H. Roosens, Sigrid C. J. De Keersmaecker

Get full text

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria by Mathieu Gand, Bram Bloemen, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

Get full text

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance by Bram Bloemen, Mathieu Gand, Kevin Vanneste, Kathleen Marchal, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

Get full text

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities by Alexander Van Uffelen, Andrés Posadas, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker, Kevin Vanneste

Get full text

The potential of including the microbiome as biomarker in population-based health studies: methods and benefits by Florence E. Buytaers, Nicolas Berger, Johan Van der Heyden, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

Get full text

Characterization of Genetically Modified Microorganisms Using Short- and Long-Read Whole-Genome Sequencing Reveals Contaminations of Related Origin in Multiple Commercial Food Enzy... by Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kevin Vanneste

Get full text

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:. by Assia Saltykova, Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy H C Roosens, Kathleen Marchal, Sigrid C J De Keersmaecker

Get full text

Metagenomic Characterization of Multiple Genetically Modified <i>Bacillus</i> Contaminations in Commercial Microbial Fermentation Products by Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. J. Roosens, Kevin Vanneste

Get full text

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination by Bas Berbers, Pieter-Jan Ceyssens, Pierre Bogaerts, Kevin Vanneste, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker

Get full text

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products by Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere, Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens, Kevin Vanneste

Get full text

MLVA as a tool for public health surveillance of human Salmonella Typhimurium: prospective study in Belgium and evaluation of MLVA loci stability. by Véronique Wuyts, Wesley Mattheus, Guillaume De Laminne de Bex, Christa Wildemauwe, Nancy H C Roosens, Kathleen Marchal, Sigrid C J De Keersmaecker, Sophie Bertrand

Get full text

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine by Florence E. Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Sigrid C. J. De Keersmaecker

Get full text

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circ... by Bert Bogaerts, Raf Winand, Julien Van Braekel, Wesley Mattheus, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kathleen Marchal, Kevin Vanneste, Pieter-Jan Ceyssens

Get full text

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study by Florence E. Buytaers, Bavo Verhaegen, Mathieu Gand, Jolien D’aes, Kevin Vanneste, Nancy H. C. Roosens, Kathleen Marchal, Sarah Denayer, Sigrid C. J. De Keersmaecker

Get full text

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling by Florence E. Buytaers, Florence E. Buytaers, Bavo Verhaegen, Tom Van Nieuwenhuysen, Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal, Kathleen Marchal, Sigrid C. J. De Keersmaecker

Get full text

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches by Yari Van Laere, Yari Van Laere, Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal, Kathleen Marchal, Nancy H. C. Roosens, Kevin Vanneste

Get full text

Genomic comparison between Mycobacterium bovis and Mycobacterium microti and in silico analysis of peptide-based biomarkers for serodiagnosis by Charlotte Moens, Charlotte Moens, Bert Bogaerts, Victor Lorente-Leal, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Laurent Mostin, David Fretin, Sylvie Marché

Get full text

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Nei... by Bert Bogaerts, Raf Winand, Qiang Fu, Julien Van Braekel, Pieter-Jan Ceyssens, Wesley Mattheus, Sophie Bertrand, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens, Kevin Vanneste

Get full text

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country by Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, Sarah Denayer, Florence Crombé, Klara De Rauw, Denis Piérard, Kathleen Marchal, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

Get full text