fluff: exploratory analysis and visualization of high-throughput sequencing data by Georgios Georgiou, Simon J. van Heeringen

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Role of p53 serine 46 in p53 target gene regulation. by Leonie Smeenk, Simon J van Heeringen, Max Koeppel, Bianca Gilbert, Eva Janssen-Megens, Hendrik G Stunnenberg, Marion Lohrum

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Seq2science: an end-to-end workflow for functional genomics analysis by Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G.A. Smits, Rebecca R. Snabel, Sybren Rinzema, Simon J. van Heeringen

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scANANSE gene regulatory network and motif analysis of single-cell clusters [version 2; peer review: 2 approved] by Julian A. Arts, Siebren Frölich, Jos G.A. Smits, Huiqing Zhou, Joost H.A. Martens, Simon J. van Heeringen, Rebecca R. Snabel, Branco M.H. Heuts

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Genetic identification of a network of factors that functionally interact with the nucleosome remodeling ATPase ISWI. by Giosalba Burgio, Gaspare La Rocca, Anna Sala, Walter Arancio, Dario Di Gesù, Marianna Collesano, Adam S Sperling, Jennifer A Armstrong, Simon J van Heeringen, Colin Logie, John W Tamkun, Davide F V Corona

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Identification of the regulatory circuit governing corneal epithelial fate determination and disease. by Jos G A Smits, Dulce Lima Cunha, Maryam Amini, Marina Bertolin, Camille Laberthonnière, Jieqiong Qu, Nicholas Owen, Lorenz Latta, Berthold Seitz, Lauriane N Roux, Tanja Stachon, Stefano Ferrari, Mariya Moosajee, Daniel Aberdam, Nora Szentmary, Simon J van Heeringen, Huiqing Zhou

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Multi-omics analysis reveals distinct gene regulatory mechanisms between primary and organoid-derived human hepatocytes by Haoyu Wu, Annie S. P. Yang, Suzan Stelloo, Floris J. M. Roos, René H. M. te Morsche, Anne H. Verkerk, Maria V. Luna-Velez, Laura Wingens, Johannes H. W. de Wilt, Robert W. Sauerwein, Klaas W. Mulder, Simon J. van Heeringen, Monique M. A. Verstegen, Luc J. W. van der Laan, Hendrik Marks, Richárd Bártfai

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